folding_abalone9-18.log 13 KB

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  1. ///////////////////////////////////////////
  2. // Running ctGAN on folding_abalone9-18
  3. ///////////////////////////////////////////
  4. Load 'data_input/folding_abalone9-18'
  5. from pickle file
  6. Data loaded.
  7. -> Shuffling data
  8. ### Start exercise for synthetic point generator
  9. ====== Step 1/5 =======
  10. -> Shuffling data
  11. -> Spliting data to slices
  12. ------ Step 1/5: Slice 1/5 -------
  13. -> Reset the GAN
  14. -> Train generator for synthetic samples
  15. -> create 518 synthetic samples
  16. -> test with 'LR'
  17. LR tn, fp: 132, 6
  18. LR fn, tp: 4, 5
  19. LR f1 score: 0.500
  20. LR cohens kappa score: 0.464
  21. LR average precision score: 0.554
  22. -> test with 'GB'
  23. GB tn, fp: 134, 4
  24. GB fn, tp: 4, 5
  25. GB f1 score: 0.556
  26. GB cohens kappa score: 0.527
  27. -> test with 'KNN'
  28. KNN tn, fp: 138, 0
  29. KNN fn, tp: 9, 0
  30. KNN f1 score: 0.000
  31. KNN cohens kappa score: 0.000
  32. ------ Step 1/5: Slice 2/5 -------
  33. -> Reset the GAN
  34. -> Train generator for synthetic samples
  35. -> create 518 synthetic samples
  36. -> test with 'LR'
  37. LR tn, fp: 136, 2
  38. LR fn, tp: 7, 2
  39. LR f1 score: 0.308
  40. LR cohens kappa score: 0.281
  41. LR average precision score: 0.363
  42. -> test with 'GB'
  43. GB tn, fp: 135, 3
  44. GB fn, tp: 6, 3
  45. GB f1 score: 0.400
  46. GB cohens kappa score: 0.369
  47. -> test with 'KNN'
  48. KNN tn, fp: 135, 3
  49. KNN fn, tp: 8, 1
  50. KNN f1 score: 0.154
  51. KNN cohens kappa score: 0.121
  52. ------ Step 1/5: Slice 3/5 -------
  53. -> Reset the GAN
  54. -> Train generator for synthetic samples
  55. -> create 518 synthetic samples
  56. -> test with 'LR'
  57. LR tn, fp: 130, 8
  58. LR fn, tp: 8, 1
  59. LR f1 score: 0.111
  60. LR cohens kappa score: 0.053
  61. LR average precision score: 0.072
  62. -> test with 'GB'
  63. GB tn, fp: 135, 3
  64. GB fn, tp: 7, 2
  65. GB f1 score: 0.286
  66. GB cohens kappa score: 0.253
  67. -> test with 'KNN'
  68. KNN tn, fp: 138, 0
  69. KNN fn, tp: 8, 1
  70. KNN f1 score: 0.200
  71. KNN cohens kappa score: 0.190
  72. ------ Step 1/5: Slice 4/5 -------
  73. -> Reset the GAN
  74. -> Train generator for synthetic samples
  75. -> create 518 synthetic samples
  76. -> test with 'LR'
  77. LR tn, fp: 133, 5
  78. LR fn, tp: 5, 4
  79. LR f1 score: 0.444
  80. LR cohens kappa score: 0.408
  81. LR average precision score: 0.390
  82. -> test with 'GB'
  83. GB tn, fp: 137, 1
  84. GB fn, tp: 7, 2
  85. GB f1 score: 0.333
  86. GB cohens kappa score: 0.312
  87. -> test with 'KNN'
  88. KNN tn, fp: 137, 1
  89. KNN fn, tp: 7, 2
  90. KNN f1 score: 0.333
  91. KNN cohens kappa score: 0.312
  92. ------ Step 1/5: Slice 5/5 -------
  93. -> Reset the GAN
  94. -> Train generator for synthetic samples
  95. -> create 516 synthetic samples
  96. -> test with 'LR'
  97. LR tn, fp: 134, 3
  98. LR fn, tp: 5, 1
  99. LR f1 score: 0.200
  100. LR cohens kappa score: 0.172
  101. LR average precision score: 0.159
  102. -> test with 'GB'
  103. GB tn, fp: 137, 0
  104. GB fn, tp: 6, 0
  105. GB f1 score: 0.000
  106. GB cohens kappa score: 0.000
  107. -> test with 'KNN'
  108. KNN tn, fp: 137, 0
  109. KNN fn, tp: 5, 1
  110. KNN f1 score: 0.286
  111. KNN cohens kappa score: 0.277
  112. ====== Step 2/5 =======
  113. -> Shuffling data
  114. -> Spliting data to slices
  115. ------ Step 2/5: Slice 1/5 -------
  116. -> Reset the GAN
  117. -> Train generator for synthetic samples
  118. -> create 518 synthetic samples
  119. -> test with 'LR'
  120. LR tn, fp: 136, 2
  121. LR fn, tp: 6, 3
  122. LR f1 score: 0.429
  123. LR cohens kappa score: 0.402
  124. LR average precision score: 0.470
  125. -> test with 'GB'
  126. GB tn, fp: 137, 1
  127. GB fn, tp: 7, 2
  128. GB f1 score: 0.333
  129. GB cohens kappa score: 0.312
  130. -> test with 'KNN'
  131. KNN tn, fp: 137, 1
  132. KNN fn, tp: 8, 1
  133. KNN f1 score: 0.182
  134. KNN cohens kappa score: 0.163
  135. ------ Step 2/5: Slice 2/5 -------
  136. -> Reset the GAN
  137. -> Train generator for synthetic samples
  138. -> create 518 synthetic samples
  139. -> test with 'LR'
  140. LR tn, fp: 125, 13
  141. LR fn, tp: 7, 2
  142. LR f1 score: 0.167
  143. LR cohens kappa score: 0.098
  144. LR average precision score: 0.234
  145. -> test with 'GB'
  146. GB tn, fp: 133, 5
  147. GB fn, tp: 6, 3
  148. GB f1 score: 0.353
  149. GB cohens kappa score: 0.313
  150. -> test with 'KNN'
  151. KNN tn, fp: 138, 0
  152. KNN fn, tp: 8, 1
  153. KNN f1 score: 0.200
  154. KNN cohens kappa score: 0.190
  155. ------ Step 2/5: Slice 3/5 -------
  156. -> Reset the GAN
  157. -> Train generator for synthetic samples
  158. -> create 518 synthetic samples
  159. -> test with 'LR'
  160. LR tn, fp: 131, 7
  161. LR fn, tp: 8, 1
  162. LR f1 score: 0.118
  163. LR cohens kappa score: 0.064
  164. LR average precision score: 0.089
  165. -> test with 'GB'
  166. GB tn, fp: 134, 4
  167. GB fn, tp: 7, 2
  168. GB f1 score: 0.267
  169. GB cohens kappa score: 0.229
  170. -> test with 'KNN'
  171. KNN tn, fp: 135, 3
  172. KNN fn, tp: 7, 2
  173. KNN f1 score: 0.286
  174. KNN cohens kappa score: 0.253
  175. ------ Step 2/5: Slice 4/5 -------
  176. -> Reset the GAN
  177. -> Train generator for synthetic samples
  178. -> create 518 synthetic samples
  179. -> test with 'LR'
  180. LR tn, fp: 128, 10
  181. LR fn, tp: 3, 6
  182. LR f1 score: 0.480
  183. LR cohens kappa score: 0.436
  184. LR average precision score: 0.651
  185. -> test with 'GB'
  186. GB tn, fp: 135, 3
  187. GB fn, tp: 5, 4
  188. GB f1 score: 0.500
  189. GB cohens kappa score: 0.472
  190. -> test with 'KNN'
  191. KNN tn, fp: 137, 1
  192. KNN fn, tp: 7, 2
  193. KNN f1 score: 0.333
  194. KNN cohens kappa score: 0.312
  195. ------ Step 2/5: Slice 5/5 -------
  196. -> Reset the GAN
  197. -> Train generator for synthetic samples
  198. -> create 516 synthetic samples
  199. -> test with 'LR'
  200. LR tn, fp: 126, 11
  201. LR fn, tp: 3, 3
  202. LR f1 score: 0.300
  203. LR cohens kappa score: 0.256
  204. LR average precision score: 0.205
  205. -> test with 'GB'
  206. GB tn, fp: 129, 8
  207. GB fn, tp: 4, 2
  208. GB f1 score: 0.250
  209. GB cohens kappa score: 0.208
  210. -> test with 'KNN'
  211. KNN tn, fp: 137, 0
  212. KNN fn, tp: 5, 1
  213. KNN f1 score: 0.286
  214. KNN cohens kappa score: 0.277
  215. ====== Step 3/5 =======
  216. -> Shuffling data
  217. -> Spliting data to slices
  218. ------ Step 3/5: Slice 1/5 -------
  219. -> Reset the GAN
  220. -> Train generator for synthetic samples
  221. -> create 518 synthetic samples
  222. -> test with 'LR'
  223. LR tn, fp: 132, 6
  224. LR fn, tp: 6, 3
  225. LR f1 score: 0.333
  226. LR cohens kappa score: 0.290
  227. LR average precision score: 0.398
  228. -> test with 'GB'
  229. GB tn, fp: 135, 3
  230. GB fn, tp: 8, 1
  231. GB f1 score: 0.154
  232. GB cohens kappa score: 0.121
  233. -> test with 'KNN'
  234. KNN tn, fp: 138, 0
  235. KNN fn, tp: 8, 1
  236. KNN f1 score: 0.200
  237. KNN cohens kappa score: 0.190
  238. ------ Step 3/5: Slice 2/5 -------
  239. -> Reset the GAN
  240. -> Train generator for synthetic samples
  241. -> create 518 synthetic samples
  242. -> test with 'LR'
  243. LR tn, fp: 123, 15
  244. LR fn, tp: 7, 2
  245. LR f1 score: 0.154
  246. LR cohens kappa score: 0.080
  247. LR average precision score: 0.103
  248. -> test with 'GB'
  249. GB tn, fp: 133, 5
  250. GB fn, tp: 6, 3
  251. GB f1 score: 0.353
  252. GB cohens kappa score: 0.313
  253. -> test with 'KNN'
  254. KNN tn, fp: 136, 2
  255. KNN fn, tp: 9, 0
  256. KNN f1 score: 0.000
  257. KNN cohens kappa score: -0.023
  258. ------ Step 3/5: Slice 3/5 -------
  259. -> Reset the GAN
  260. -> Train generator for synthetic samples
  261. -> create 518 synthetic samples
  262. -> test with 'LR'
  263. LR tn, fp: 137, 1
  264. LR fn, tp: 5, 4
  265. LR f1 score: 0.571
  266. LR cohens kappa score: 0.552
  267. LR average precision score: 0.617
  268. -> test with 'GB'
  269. GB tn, fp: 136, 2
  270. GB fn, tp: 7, 2
  271. GB f1 score: 0.308
  272. GB cohens kappa score: 0.281
  273. -> test with 'KNN'
  274. KNN tn, fp: 137, 1
  275. KNN fn, tp: 9, 0
  276. KNN f1 score: 0.000
  277. KNN cohens kappa score: -0.012
  278. ------ Step 3/5: Slice 4/5 -------
  279. -> Reset the GAN
  280. -> Train generator for synthetic samples
  281. -> create 518 synthetic samples
  282. -> test with 'LR'
  283. LR tn, fp: 131, 7
  284. LR fn, tp: 4, 5
  285. LR f1 score: 0.476
  286. LR cohens kappa score: 0.437
  287. LR average precision score: 0.584
  288. -> test with 'GB'
  289. GB tn, fp: 133, 5
  290. GB fn, tp: 4, 5
  291. GB f1 score: 0.526
  292. GB cohens kappa score: 0.494
  293. -> test with 'KNN'
  294. KNN tn, fp: 138, 0
  295. KNN fn, tp: 6, 3
  296. KNN f1 score: 0.500
  297. KNN cohens kappa score: 0.484
  298. ------ Step 3/5: Slice 5/5 -------
  299. -> Reset the GAN
  300. -> Train generator for synthetic samples
  301. -> create 516 synthetic samples
  302. -> test with 'LR'
  303. LR tn, fp: 120, 17
  304. LR fn, tp: 5, 1
  305. LR f1 score: 0.083
  306. LR cohens kappa score: 0.022
  307. LR average precision score: 0.224
  308. -> test with 'GB'
  309. GB tn, fp: 133, 4
  310. GB fn, tp: 5, 1
  311. GB f1 score: 0.182
  312. GB cohens kappa score: 0.149
  313. -> test with 'KNN'
  314. KNN tn, fp: 133, 4
  315. KNN fn, tp: 5, 1
  316. KNN f1 score: 0.182
  317. KNN cohens kappa score: 0.149
  318. ====== Step 4/5 =======
  319. -> Shuffling data
  320. -> Spliting data to slices
  321. ------ Step 4/5: Slice 1/5 -------
  322. -> Reset the GAN
  323. -> Train generator for synthetic samples
  324. -> create 518 synthetic samples
  325. -> test with 'LR'
  326. LR tn, fp: 131, 7
  327. LR fn, tp: 5, 4
  328. LR f1 score: 0.400
  329. LR cohens kappa score: 0.357
  330. LR average precision score: 0.514
  331. -> test with 'GB'
  332. GB tn, fp: 135, 3
  333. GB fn, tp: 6, 3
  334. GB f1 score: 0.400
  335. GB cohens kappa score: 0.369
  336. -> test with 'KNN'
  337. KNN tn, fp: 138, 0
  338. KNN fn, tp: 7, 2
  339. KNN f1 score: 0.364
  340. KNN cohens kappa score: 0.349
  341. ------ Step 4/5: Slice 2/5 -------
  342. -> Reset the GAN
  343. -> Train generator for synthetic samples
  344. -> create 518 synthetic samples
  345. -> test with 'LR'
  346. LR tn, fp: 119, 19
  347. LR fn, tp: 4, 5
  348. LR f1 score: 0.303
  349. LR cohens kappa score: 0.235
  350. LR average precision score: 0.394
  351. -> test with 'GB'
  352. GB tn, fp: 133, 5
  353. GB fn, tp: 6, 3
  354. GB f1 score: 0.353
  355. GB cohens kappa score: 0.313
  356. -> test with 'KNN'
  357. KNN tn, fp: 137, 1
  358. KNN fn, tp: 7, 2
  359. KNN f1 score: 0.333
  360. KNN cohens kappa score: 0.312
  361. ------ Step 4/5: Slice 3/5 -------
  362. -> Reset the GAN
  363. -> Train generator for synthetic samples
  364. -> create 518 synthetic samples
  365. -> test with 'LR'
  366. LR tn, fp: 137, 1
  367. LR fn, tp: 5, 4
  368. LR f1 score: 0.571
  369. LR cohens kappa score: 0.552
  370. LR average precision score: 0.580
  371. -> test with 'GB'
  372. GB tn, fp: 133, 5
  373. GB fn, tp: 6, 3
  374. GB f1 score: 0.353
  375. GB cohens kappa score: 0.313
  376. -> test with 'KNN'
  377. KNN tn, fp: 138, 0
  378. KNN fn, tp: 9, 0
  379. KNN f1 score: 0.000
  380. KNN cohens kappa score: 0.000
  381. ------ Step 4/5: Slice 4/5 -------
  382. -> Reset the GAN
  383. -> Train generator for synthetic samples
  384. -> create 518 synthetic samples
  385. -> test with 'LR'
  386. LR tn, fp: 111, 27
  387. LR fn, tp: 5, 4
  388. LR f1 score: 0.200
  389. LR cohens kappa score: 0.116
  390. LR average precision score: 0.204
  391. -> test with 'GB'
  392. GB tn, fp: 136, 2
  393. GB fn, tp: 7, 2
  394. GB f1 score: 0.308
  395. GB cohens kappa score: 0.281
  396. -> test with 'KNN'
  397. KNN tn, fp: 136, 2
  398. KNN fn, tp: 8, 1
  399. KNN f1 score: 0.167
  400. KNN cohens kappa score: 0.140
  401. ------ Step 4/5: Slice 5/5 -------
  402. -> Reset the GAN
  403. -> Train generator for synthetic samples
  404. -> create 516 synthetic samples
  405. -> test with 'LR'
  406. LR tn, fp: 131, 6
  407. LR fn, tp: 3, 3
  408. LR f1 score: 0.400
  409. LR cohens kappa score: 0.368
  410. LR average precision score: 0.361
  411. -> test with 'GB'
  412. GB tn, fp: 130, 7
  413. GB fn, tp: 5, 1
  414. GB f1 score: 0.143
  415. GB cohens kappa score: 0.100
  416. -> test with 'KNN'
  417. KNN tn, fp: 136, 1
  418. KNN fn, tp: 5, 1
  419. KNN f1 score: 0.250
  420. KNN cohens kappa score: 0.234
  421. ====== Step 5/5 =======
  422. -> Shuffling data
  423. -> Spliting data to slices
  424. ------ Step 5/5: Slice 1/5 -------
  425. -> Reset the GAN
  426. -> Train generator for synthetic samples
  427. -> create 518 synthetic samples
  428. -> test with 'LR'
  429. LR tn, fp: 124, 14
  430. LR fn, tp: 9, 0
  431. LR f1 score: 0.000
  432. LR cohens kappa score: -0.081
  433. LR average precision score: 0.071
  434. -> test with 'GB'
  435. GB tn, fp: 129, 9
  436. GB fn, tp: 8, 1
  437. GB f1 score: 0.105
  438. GB cohens kappa score: 0.044
  439. -> test with 'KNN'
  440. KNN tn, fp: 134, 4
  441. KNN fn, tp: 8, 1
  442. KNN f1 score: 0.143
  443. KNN cohens kappa score: 0.104
  444. ------ Step 5/5: Slice 2/5 -------
  445. -> Reset the GAN
  446. -> Train generator for synthetic samples
  447. -> create 518 synthetic samples
  448. -> test with 'LR'
  449. LR tn, fp: 136, 2
  450. LR fn, tp: 5, 4
  451. LR f1 score: 0.533
  452. LR cohens kappa score: 0.509
  453. LR average precision score: 0.588
  454. -> test with 'GB'
  455. GB tn, fp: 135, 3
  456. GB fn, tp: 7, 2
  457. GB f1 score: 0.286
  458. GB cohens kappa score: 0.253
  459. -> test with 'KNN'
  460. KNN tn, fp: 138, 0
  461. KNN fn, tp: 9, 0
  462. KNN f1 score: 0.000
  463. KNN cohens kappa score: 0.000
  464. ------ Step 5/5: Slice 3/5 -------
  465. -> Reset the GAN
  466. -> Train generator for synthetic samples
  467. -> create 518 synthetic samples
  468. -> test with 'LR'
  469. LR tn, fp: 96, 42
  470. LR fn, tp: 2, 7
  471. LR f1 score: 0.241
  472. LR cohens kappa score: 0.154
  473. LR average precision score: 0.306
  474. -> test with 'GB'
  475. GB tn, fp: 133, 5
  476. GB fn, tp: 7, 2
  477. GB f1 score: 0.250
  478. GB cohens kappa score: 0.208
  479. -> test with 'KNN'
  480. KNN tn, fp: 135, 3
  481. KNN fn, tp: 7, 2
  482. KNN f1 score: 0.286
  483. KNN cohens kappa score: 0.253
  484. ------ Step 5/5: Slice 4/5 -------
  485. -> Reset the GAN
  486. -> Train generator for synthetic samples
  487. -> create 518 synthetic samples
  488. -> test with 'LR'
  489. LR tn, fp: 127, 11
  490. LR fn, tp: 5, 4
  491. LR f1 score: 0.333
  492. LR cohens kappa score: 0.278
  493. LR average precision score: 0.408
  494. -> test with 'GB'
  495. GB tn, fp: 136, 2
  496. GB fn, tp: 6, 3
  497. GB f1 score: 0.429
  498. GB cohens kappa score: 0.402
  499. -> test with 'KNN'
  500. KNN tn, fp: 138, 0
  501. KNN fn, tp: 7, 2
  502. KNN f1 score: 0.364
  503. KNN cohens kappa score: 0.349
  504. ------ Step 5/5: Slice 5/5 -------
  505. -> Reset the GAN
  506. -> Train generator for synthetic samples
  507. -> create 516 synthetic samples
  508. -> test with 'LR'
  509. LR tn, fp: 126, 11
  510. LR fn, tp: 4, 2
  511. LR f1 score: 0.211
  512. LR cohens kappa score: 0.162
  513. LR average precision score: 0.304
  514. -> test with 'GB'
  515. GB tn, fp: 137, 0
  516. GB fn, tp: 3, 3
  517. GB f1 score: 0.667
  518. GB cohens kappa score: 0.657
  519. -> test with 'KNN'
  520. KNN tn, fp: 137, 0
  521. KNN fn, tp: 5, 1
  522. KNN f1 score: 0.286
  523. KNN cohens kappa score: 0.277
  524. ### Exercise is done.
  525. -----[ LR ]-----
  526. maximum:
  527. LR tn, fp: 137, 42
  528. LR fn, tp: 9, 7
  529. LR f1 score: 0.571
  530. LR cohens kappa score: 0.552
  531. LR average precision score: 0.651
  532. average:
  533. LR tn, fp: 127.68, 10.12
  534. LR fn, tp: 5.2, 3.2
  535. LR f1 score: 0.315
  536. LR cohens kappa score: 0.267
  537. LR average precision score: 0.354
  538. minimum:
  539. LR tn, fp: 96, 1
  540. LR fn, tp: 2, 0
  541. LR f1 score: 0.000
  542. LR cohens kappa score: -0.081
  543. LR average precision score: 0.071
  544. -----[ GB ]-----
  545. maximum:
  546. GB tn, fp: 137, 9
  547. GB fn, tp: 8, 5
  548. GB f1 score: 0.667
  549. GB cohens kappa score: 0.657
  550. average:
  551. GB tn, fp: 134.12, 3.68
  552. GB fn, tp: 6.0, 2.4
  553. GB f1 score: 0.324
  554. GB cohens kappa score: 0.292
  555. minimum:
  556. GB tn, fp: 129, 0
  557. GB fn, tp: 3, 0
  558. GB f1 score: 0.000
  559. GB cohens kappa score: 0.000
  560. -----[ KNN ]-----
  561. maximum:
  562. KNN tn, fp: 138, 4
  563. KNN fn, tp: 9, 3
  564. KNN f1 score: 0.500
  565. KNN cohens kappa score: 0.484
  566. average:
  567. KNN tn, fp: 136.72, 1.08
  568. KNN fn, tp: 7.24, 1.16
  569. KNN f1 score: 0.213
  570. KNN cohens kappa score: 0.196
  571. minimum:
  572. KNN tn, fp: 133, 0
  573. KNN fn, tp: 5, 0
  574. KNN f1 score: 0.000
  575. KNN cohens kappa score: -0.023