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- ///////////////////////////////////////////
- // Running SpheredNoise on folding_kr-vs-k-zero-one_vs_draw
- ///////////////////////////////////////////
- Load 'data_input/folding_kr-vs-k-zero-one_vs_draw'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.082762530298219
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 556, 4
- LR fn, tp: 3, 18
- LR f1 score: 0.837
- LR cohens kappa score: 0.831
- LR average precision score: 0.833
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 559, 1
- KNN fn, tp: 7, 14
- KNN f1 score: 0.778
- KNN cohens kappa score: 0.771
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 6
- LR fn, tp: 5, 16
- LR f1 score: 0.744
- LR cohens kappa score: 0.734
- LR average precision score: 0.892
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 559, 1
- KNN fn, tp: 4, 17
- KNN f1 score: 0.872
- KNN cohens kappa score: 0.867
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 548, 12
- LR fn, tp: 5, 16
- LR f1 score: 0.653
- LR cohens kappa score: 0.638
- LR average precision score: 0.771
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 3, 18
- KNN f1 score: 0.878
- KNN cohens kappa score: 0.874
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:5.5677643628300215
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 549, 11
- LR fn, tp: 3, 18
- LR f1 score: 0.720
- LR cohens kappa score: 0.708
- LR average precision score: 0.838
- -> test with 'GB'
- GB tn, fp: 557, 3
- GB fn, tp: 1, 20
- GB f1 score: 0.909
- GB cohens kappa score: 0.906
- -> test with 'KNN'
- KNN tn, fp: 560, 0
- KNN fn, tp: 4, 17
- KNN f1 score: 0.895
- KNN cohens kappa score: 0.891
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2240/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 6
- LR fn, tp: 3, 18
- LR f1 score: 0.800
- LR cohens kappa score: 0.792
- LR average precision score: 0.921
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 556, 0
- KNN fn, tp: 3, 18
- KNN f1 score: 0.923
- KNN cohens kappa score: 0.920
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 553, 7
- LR fn, tp: 2, 19
- LR f1 score: 0.809
- LR cohens kappa score: 0.801
- LR average precision score: 0.893
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 560, 0
- KNN fn, tp: 3, 18
- KNN f1 score: 0.923
- KNN cohens kappa score: 0.920
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.082762530298219
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 557, 3
- LR fn, tp: 4, 17
- LR f1 score: 0.829
- LR cohens kappa score: 0.823
- LR average precision score: 0.917
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 560, 0
- KNN fn, tp: 4, 17
- KNN f1 score: 0.895
- KNN cohens kappa score: 0.891
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 5
- LR fn, tp: 3, 18
- LR f1 score: 0.818
- LR cohens kappa score: 0.811
- LR average precision score: 0.894
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 559, 1
- KNN fn, tp: 6, 15
- KNN f1 score: 0.811
- KNN cohens kappa score: 0.805
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:5.5677643628300215
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 547, 13
- LR fn, tp: 3, 18
- LR f1 score: 0.692
- LR cohens kappa score: 0.678
- LR average precision score: 0.826
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 556, 4
- KNN fn, tp: 6, 15
- KNN f1 score: 0.750
- KNN cohens kappa score: 0.741
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2240/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 546, 10
- LR fn, tp: 6, 15
- LR f1 score: 0.652
- LR cohens kappa score: 0.638
- LR average precision score: 0.813
- -> test with 'GB'
- GB tn, fp: 555, 1
- GB fn, tp: 0, 21
- GB f1 score: 0.977
- GB cohens kappa score: 0.976
- -> test with 'KNN'
- KNN tn, fp: 556, 0
- KNN fn, tp: 5, 16
- KNN f1 score: 0.865
- KNN cohens kappa score: 0.860
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 552, 8
- LR fn, tp: 3, 18
- LR f1 score: 0.766
- LR cohens kappa score: 0.756
- LR average precision score: 0.902
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 3, 18
- KNN f1 score: 0.878
- KNN cohens kappa score: 0.874
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 558, 2
- LR fn, tp: 4, 17
- LR f1 score: 0.850
- LR cohens kappa score: 0.845
- LR average precision score: 0.868
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 7, 14
- KNN f1 score: 0.757
- KNN cohens kappa score: 0.749
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 546, 14
- LR fn, tp: 5, 16
- LR f1 score: 0.627
- LR cohens kappa score: 0.611
- LR average precision score: 0.763
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 560, 0
- KNN fn, tp: 6, 15
- KNN f1 score: 0.833
- KNN cohens kappa score: 0.828
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:5.5677643628300215
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 549, 11
- LR fn, tp: 3, 18
- LR f1 score: 0.720
- LR cohens kappa score: 0.708
- LR average precision score: 0.891
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 560, 0
- KNN fn, tp: 3, 18
- KNN f1 score: 0.923
- KNN cohens kappa score: 0.920
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2240/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 2
- LR fn, tp: 3, 18
- LR f1 score: 0.878
- LR cohens kappa score: 0.874
- LR average precision score: 0.906
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 556, 0
- KNN fn, tp: 4, 17
- KNN f1 score: 0.895
- KNN cohens kappa score: 0.891
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 552, 8
- LR fn, tp: 3, 18
- LR f1 score: 0.766
- LR cohens kappa score: 0.756
- LR average precision score: 0.877
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 3, 18
- KNN f1 score: 0.878
- KNN cohens kappa score: 0.874
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 552, 8
- LR fn, tp: 2, 19
- LR f1 score: 0.792
- LR cohens kappa score: 0.783
- LR average precision score: 0.937
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 560, 0
- KNN fn, tp: 3, 18
- KNN f1 score: 0.923
- KNN cohens kappa score: 0.920
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 5
- LR fn, tp: 7, 14
- LR f1 score: 0.700
- LR cohens kappa score: 0.689
- LR average precision score: 0.777
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 8, 13
- KNN f1 score: 0.722
- KNN cohens kappa score: 0.714
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:5.5677643628300215
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 551, 9
- LR fn, tp: 3, 18
- LR f1 score: 0.750
- LR cohens kappa score: 0.739
- LR average precision score: 0.855
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 0, 21
- GB f1 score: 0.977
- GB cohens kappa score: 0.976
- -> test with 'KNN'
- KNN tn, fp: 559, 1
- KNN fn, tp: 3, 18
- KNN f1 score: 0.900
- KNN cohens kappa score: 0.896
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2240/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.082762530298219
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 6
- LR fn, tp: 3, 18
- LR f1 score: 0.800
- LR cohens kappa score: 0.792
- LR average precision score: 0.868
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 556, 0
- KNN fn, tp: 6, 15
- KNN f1 score: 0.833
- KNN cohens kappa score: 0.828
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:5.5677643628300215
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 556, 4
- LR fn, tp: 3, 18
- LR f1 score: 0.837
- LR cohens kappa score: 0.831
- LR average precision score: 0.952
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 560, 0
- KNN fn, tp: 4, 17
- KNN f1 score: 0.895
- KNN cohens kappa score: 0.891
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.082762530298219
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 553, 7
- LR fn, tp: 7, 14
- LR f1 score: 0.667
- LR cohens kappa score: 0.654
- LR average precision score: 0.836
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 3, 18
- GB f1 score: 0.923
- GB cohens kappa score: 0.920
- -> test with 'KNN'
- KNN tn, fp: 560, 0
- KNN fn, tp: 5, 16
- KNN f1 score: 0.865
- KNN cohens kappa score: 0.861
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 552, 8
- LR fn, tp: 4, 17
- LR f1 score: 0.739
- LR cohens kappa score: 0.728
- LR average precision score: 0.785
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 5, 16
- KNN f1 score: 0.821
- KNN cohens kappa score: 0.814
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2236/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 10
- LR fn, tp: 5, 16
- LR f1 score: 0.681
- LR cohens kappa score: 0.668
- LR average precision score: 0.816
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 559, 1
- KNN fn, tp: 5, 16
- KNN f1 score: 0.842
- KNN cohens kappa score: 0.837
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- Train 2240/84 points
- -> new disc
- -> calc distances
- -> statistics
- trained 84 points min:1.0 max:6.0
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 548, 8
- LR fn, tp: 1, 20
- LR f1 score: 0.816
- LR cohens kappa score: 0.808
- LR average precision score: 0.900
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 555, 1
- KNN fn, tp: 2, 19
- KNN f1 score: 0.927
- KNN cohens kappa score: 0.924
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 558, 14
- LR fn, tp: 7, 20
- LR f1 score: 0.878
- LR cohens kappa score: 0.874
- LR average precision score: 0.952
- average:
- LR tn, fp: 551.72, 7.48
- LR fn, tp: 3.72, 17.28
- LR f1 score: 0.758
- LR cohens kappa score: 0.748
- LR average precision score: 0.861
- minimum:
- LR tn, fp: 546, 2
- LR fn, tp: 1, 14
- LR f1 score: 0.627
- LR cohens kappa score: 0.611
- LR average precision score: 0.763
- -----[ GB ]-----
- maximum:
- GB tn, fp: 560, 3
- GB fn, tp: 3, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- average:
- GB tn, fp: 558.76, 0.44
- GB fn, tp: 0.92, 20.08
- GB f1 score: 0.967
- GB cohens kappa score: 0.966
- minimum:
- GB tn, fp: 555, 0
- GB fn, tp: 0, 18
- GB f1 score: 0.909
- GB cohens kappa score: 0.906
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 560, 4
- KNN fn, tp: 8, 19
- KNN f1 score: 0.927
- KNN cohens kappa score: 0.924
- average:
- KNN tn, fp: 558.32, 0.88
- KNN fn, tp: 4.48, 16.52
- KNN f1 score: 0.859
- KNN cohens kappa score: 0.855
- minimum:
- KNN tn, fp: 555, 0
- KNN fn, tp: 2, 13
- KNN f1 score: 0.722
- KNN cohens kappa score: 0.714
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