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- ///////////////////////////////////////////
- // Running CTAB-GAN on folding_kr-vs-k-three_vs_eleven
- ///////////////////////////////////////////
- Load 'data_input/folding_kr-vs-k-three_vs_eleven'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 16
- LR fn, tp: 0, 17
- LR f1 score: 0.680
- LR cohens kappa score: 0.667
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 557, 14
- KNN fn, tp: 0, 17
- KNN f1 score: 0.708
- KNN cohens kappa score: 0.697
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 565, 6
- LR fn, tp: 0, 17
- LR f1 score: 0.850
- LR cohens kappa score: 0.845
- LR average precision score: 0.987
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 567, 4
- KNN fn, tp: 0, 17
- KNN f1 score: 0.895
- KNN cohens kappa score: 0.891
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 559, 12
- LR fn, tp: 0, 17
- LR f1 score: 0.739
- LR cohens kappa score: 0.729
- LR average precision score: 0.994
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 566, 5
- KNN fn, tp: 0, 17
- KNN f1 score: 0.872
- KNN cohens kappa score: 0.867
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 17
- LR fn, tp: 0, 17
- LR f1 score: 0.667
- LR cohens kappa score: 0.653
- LR average precision score: 0.991
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 566, 5
- KNN fn, tp: 1, 16
- KNN f1 score: 0.842
- KNN cohens kappa score: 0.837
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 563, 7
- LR fn, tp: 0, 13
- LR f1 score: 0.788
- LR cohens kappa score: 0.782
- LR average precision score: 0.980
- -> test with 'GB'
- GB tn, fp: 568, 2
- GB fn, tp: 0, 13
- GB f1 score: 0.929
- GB cohens kappa score: 0.927
- -> test with 'KNN'
- KNN tn, fp: 565, 5
- KNN fn, tp: 0, 13
- KNN f1 score: 0.839
- KNN cohens kappa score: 0.834
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 16
- LR fn, tp: 0, 17
- LR f1 score: 0.680
- LR cohens kappa score: 0.667
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 564, 7
- KNN fn, tp: 1, 16
- KNN f1 score: 0.800
- KNN cohens kappa score: 0.793
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 551, 20
- LR fn, tp: 0, 17
- LR f1 score: 0.630
- LR cohens kappa score: 0.614
- LR average precision score: 0.994
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 562, 9
- KNN fn, tp: 0, 17
- KNN f1 score: 0.791
- KNN cohens kappa score: 0.783
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 551, 20
- LR fn, tp: 0, 17
- LR f1 score: 0.630
- LR cohens kappa score: 0.614
- LR average precision score: 0.984
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 563, 8
- KNN fn, tp: 0, 17
- KNN f1 score: 0.810
- KNN cohens kappa score: 0.803
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 563, 8
- LR fn, tp: 1, 16
- LR f1 score: 0.780
- LR cohens kappa score: 0.773
- LR average precision score: 0.980
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 567, 4
- KNN fn, tp: 3, 14
- KNN f1 score: 0.800
- KNN cohens kappa score: 0.794
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 15
- LR fn, tp: 0, 13
- LR f1 score: 0.634
- LR cohens kappa score: 0.623
- LR average precision score: 0.995
- -> test with 'GB'
- GB tn, fp: 570, 0
- GB fn, tp: 0, 13
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 563, 7
- KNN fn, tp: 0, 13
- KNN f1 score: 0.788
- KNN cohens kappa score: 0.782
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 17
- LR fn, tp: 0, 17
- LR f1 score: 0.667
- LR cohens kappa score: 0.653
- LR average precision score: 0.990
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 563, 8
- KNN fn, tp: 0, 17
- KNN f1 score: 0.810
- KNN cohens kappa score: 0.803
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 21
- LR fn, tp: 0, 17
- LR f1 score: 0.618
- LR cohens kappa score: 0.602
- LR average precision score: 0.997
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 561, 10
- KNN fn, tp: 0, 17
- KNN f1 score: 0.773
- KNN cohens kappa score: 0.764
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 558, 13
- LR fn, tp: 0, 17
- LR f1 score: 0.723
- LR cohens kappa score: 0.713
- LR average precision score: 0.985
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 568, 3
- KNN fn, tp: 0, 17
- KNN f1 score: 0.919
- KNN cohens kappa score: 0.916
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 562, 9
- LR fn, tp: 0, 17
- LR f1 score: 0.791
- LR cohens kappa score: 0.783
- LR average precision score: 0.997
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 568, 3
- KNN fn, tp: 1, 16
- KNN f1 score: 0.889
- KNN cohens kappa score: 0.885
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:08<00:00, 1.19it/s]
100%|██████████| 10/10 [00:08<00:00, 1.17it/s]
- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 558, 12
- LR fn, tp: 0, 13
- LR f1 score: 0.684
- LR cohens kappa score: 0.675
- LR average precision score: 0.990
- -> test with 'GB'
- GB tn, fp: 570, 0
- GB fn, tp: 0, 13
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 562, 8
- KNN fn, tp: 0, 13
- KNN f1 score: 0.765
- KNN cohens kappa score: 0.758
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:09<00:00, 1.18it/s]
100%|██████████| 10/10 [00:09<00:00, 1.11it/s]
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 16
- LR fn, tp: 0, 17
- LR f1 score: 0.680
- LR cohens kappa score: 0.667
- LR average precision score: 0.994
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 562, 9
- KNN fn, tp: 0, 17
- KNN f1 score: 0.791
- KNN cohens kappa score: 0.783
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 17
- LR fn, tp: 0, 17
- LR f1 score: 0.667
- LR cohens kappa score: 0.653
- LR average precision score: 0.991
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 562, 9
- KNN fn, tp: 1, 16
- KNN f1 score: 0.762
- KNN cohens kappa score: 0.753
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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60%|██████ | 6/10 [00:04<00:02, 1.36it/s]
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 17
- LR fn, tp: 0, 17
- LR f1 score: 0.667
- LR cohens kappa score: 0.653
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 564, 7
- KNN fn, tp: 0, 17
- KNN f1 score: 0.829
- KNN cohens kappa score: 0.823
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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60%|██████ | 6/10 [00:05<00:03, 1.08it/s]
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 561, 10
- LR fn, tp: 0, 17
- LR f1 score: 0.773
- LR cohens kappa score: 0.764
- LR average precision score: 0.990
- -> test with 'GB'
- GB tn, fp: 569, 2
- GB fn, tp: 0, 17
- GB f1 score: 0.944
- GB cohens kappa score: 0.943
- -> test with 'KNN'
- KNN tn, fp: 567, 4
- KNN fn, tp: 0, 17
- KNN f1 score: 0.895
- KNN cohens kappa score: 0.891
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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50%|█████ | 5/10 [00:04<00:04, 1.19it/s]
60%|██████ | 6/10 [00:05<00:03, 1.13it/s]
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100%|██████████| 10/10 [00:08<00:00, 1.19it/s]
- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 558, 12
- LR fn, tp: 0, 13
- LR f1 score: 0.684
- LR cohens kappa score: 0.675
- LR average precision score: 0.995
- -> test with 'GB'
- GB tn, fp: 570, 0
- GB fn, tp: 0, 13
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 567, 3
- KNN fn, tp: 0, 13
- KNN f1 score: 0.897
- KNN cohens kappa score: 0.894
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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50%|█████ | 5/10 [00:04<00:04, 1.15it/s]
60%|██████ | 6/10 [00:05<00:03, 1.21it/s]
70%|███████ | 7/10 [00:05<00:02, 1.25it/s]
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100%|██████████| 10/10 [00:08<00:00, 1.23it/s]
100%|██████████| 10/10 [00:08<00:00, 1.19it/s]
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 556, 15
- LR fn, tp: 0, 17
- LR f1 score: 0.694
- LR cohens kappa score: 0.682
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 560, 11
- KNN fn, tp: 1, 16
- KNN f1 score: 0.727
- KNN cohens kappa score: 0.717
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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40%|████ | 4/10 [00:03<00:04, 1.24it/s]
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60%|██████ | 6/10 [00:04<00:03, 1.21it/s]
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80%|████████ | 8/10 [00:06<00:01, 1.17it/s]
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- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 566, 5
- LR fn, tp: 0, 17
- LR f1 score: 0.872
- LR cohens kappa score: 0.867
- LR average precision score: 0.975
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 564, 7
- KNN fn, tp: 1, 16
- KNN f1 score: 0.800
- KNN cohens kappa score: 0.793
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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60%|██████ | 6/10 [00:04<00:03, 1.25it/s]
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100%|██████████| 10/10 [00:07<00:00, 1.28it/s]
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 21
- LR fn, tp: 0, 17
- LR f1 score: 0.618
- LR cohens kappa score: 0.602
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 562, 9
- KNN fn, tp: 0, 17
- KNN f1 score: 0.791
- KNN cohens kappa score: 0.783
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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30%|███ | 3/10 [00:02<00:06, 1.09it/s]
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60%|██████ | 6/10 [00:05<00:03, 1.17it/s]
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100%|██████████| 10/10 [00:08<00:00, 1.17it/s]
100%|██████████| 10/10 [00:08<00:00, 1.15it/s]
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 556, 15
- LR fn, tp: 0, 17
- LR f1 score: 0.694
- LR cohens kappa score: 0.682
- LR average precision score: 0.990
- -> test with 'GB'
- GB tn, fp: 571, 0
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 563, 8
- KNN fn, tp: 0, 17
- KNN f1 score: 0.810
- KNN cohens kappa score: 0.803
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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20%|██ | 2/10 [00:01<00:06, 1.15it/s]
30%|███ | 3/10 [00:02<00:06, 1.16it/s]
40%|████ | 4/10 [00:03<00:04, 1.22it/s]
50%|█████ | 5/10 [00:04<00:03, 1.27it/s]
60%|██████ | 6/10 [00:04<00:03, 1.23it/s]
70%|███████ | 7/10 [00:05<00:02, 1.20it/s]
80%|████████ | 8/10 [00:06<00:01, 1.23it/s]
90%|█████████ | 9/10 [00:07<00:00, 1.21it/s]
100%|██████████| 10/10 [00:08<00:00, 1.26it/s]
100%|██████████| 10/10 [00:08<00:00, 1.23it/s]
- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 556, 14
- LR fn, tp: 0, 13
- LR f1 score: 0.650
- LR cohens kappa score: 0.639
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 570, 0
- GB fn, tp: 0, 13
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 564, 6
- KNN fn, tp: 0, 13
- KNN f1 score: 0.813
- KNN cohens kappa score: 0.807
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 566, 21
- LR fn, tp: 1, 17
- LR f1 score: 0.872
- LR cohens kappa score: 0.867
- LR average precision score: 1.000
- average:
- LR tn, fp: 556.76, 14.04
- LR fn, tp: 0.04, 16.16
- LR f1 score: 0.702
- LR cohens kappa score: 0.691
- LR average precision score: 0.992
- minimum:
- LR tn, fp: 550, 5
- LR fn, tp: 0, 13
- LR f1 score: 0.618
- LR cohens kappa score: 0.602
- LR average precision score: 0.975
- -----[ GB ]-----
- maximum:
- GB tn, fp: 571, 2
- GB fn, tp: 0, 17
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- average:
- GB tn, fp: 570.64, 0.16
- GB fn, tp: 0.0, 16.2
- GB f1 score: 0.995
- GB cohens kappa score: 0.995
- minimum:
- GB tn, fp: 568, 0
- GB fn, tp: 0, 13
- GB f1 score: 0.929
- GB cohens kappa score: 0.927
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 568, 14
- KNN fn, tp: 3, 17
- KNN f1 score: 0.919
- KNN cohens kappa score: 0.916
- average:
- KNN tn, fp: 563.88, 6.92
- KNN fn, tp: 0.36, 15.84
- KNN f1 score: 0.816
- KNN cohens kappa score: 0.810
- minimum:
- KNN tn, fp: 557, 3
- KNN fn, tp: 0, 13
- KNN f1 score: 0.708
- KNN cohens kappa score: 0.697
|