folding_kr-vs-k-zero-one_vs_draw.log 13 KB

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  1. ///////////////////////////////////////////
  2. // Running ctGAN on folding_kr-vs-k-zero-one_vs_draw
  3. ///////////////////////////////////////////
  4. Load 'data_input/folding_kr-vs-k-zero-one_vs_draw'
  5. from pickle file
  6. Data loaded.
  7. -> Shuffling data
  8. ### Start exercise for synthetic point generator
  9. ====== Step 1/5 =======
  10. -> Shuffling data
  11. -> Spliting data to slices
  12. ------ Step 1/5: Slice 1/5 -------
  13. -> Reset the GAN
  14. -> Train generator for synthetic samples
  15. -> create 2152 synthetic samples
  16. -> test with 'LR'
  17. LR tn, fp: 496, 64
  18. LR fn, tp: 0, 21
  19. LR f1 score: 0.396
  20. LR cohens kappa score: 0.359
  21. LR average precision score: 0.881
  22. -> test with 'GB'
  23. GB tn, fp: 533, 27
  24. GB fn, tp: 0, 21
  25. GB f1 score: 0.609
  26. GB cohens kappa score: 0.588
  27. -> test with 'KNN'
  28. KNN tn, fp: 547, 13
  29. KNN fn, tp: 1, 20
  30. KNN f1 score: 0.741
  31. KNN cohens kappa score: 0.729
  32. ------ Step 1/5: Slice 2/5 -------
  33. -> Reset the GAN
  34. -> Train generator for synthetic samples
  35. -> create 2152 synthetic samples
  36. -> test with 'LR'
  37. LR tn, fp: 499, 61
  38. LR fn, tp: 0, 21
  39. LR f1 score: 0.408
  40. LR cohens kappa score: 0.372
  41. LR average precision score: 0.900
  42. -> test with 'GB'
  43. GB tn, fp: 541, 19
  44. GB fn, tp: 0, 21
  45. GB f1 score: 0.689
  46. GB cohens kappa score: 0.673
  47. -> test with 'KNN'
  48. KNN tn, fp: 556, 4
  49. KNN fn, tp: 0, 21
  50. KNN f1 score: 0.913
  51. KNN cohens kappa score: 0.909
  52. ------ Step 1/5: Slice 3/5 -------
  53. -> Reset the GAN
  54. -> Train generator for synthetic samples
  55. -> create 2152 synthetic samples
  56. -> test with 'LR'
  57. LR tn, fp: 487, 73
  58. LR fn, tp: 0, 21
  59. LR f1 score: 0.365
  60. LR cohens kappa score: 0.325
  61. LR average precision score: 0.832
  62. -> test with 'GB'
  63. GB tn, fp: 534, 26
  64. GB fn, tp: 0, 21
  65. GB f1 score: 0.618
  66. GB cohens kappa score: 0.598
  67. -> test with 'KNN'
  68. KNN tn, fp: 547, 13
  69. KNN fn, tp: 0, 21
  70. KNN f1 score: 0.764
  71. KNN cohens kappa score: 0.753
  72. ------ Step 1/5: Slice 4/5 -------
  73. -> Reset the GAN
  74. -> Train generator for synthetic samples
  75. -> create 2152 synthetic samples
  76. -> test with 'LR'
  77. LR tn, fp: 496, 64
  78. LR fn, tp: 0, 21
  79. LR f1 score: 0.396
  80. LR cohens kappa score: 0.359
  81. LR average precision score: 0.818
  82. -> test with 'GB'
  83. GB tn, fp: 528, 32
  84. GB fn, tp: 0, 21
  85. GB f1 score: 0.568
  86. GB cohens kappa score: 0.544
  87. -> test with 'KNN'
  88. KNN tn, fp: 546, 14
  89. KNN fn, tp: 1, 20
  90. KNN f1 score: 0.727
  91. KNN cohens kappa score: 0.715
  92. ------ Step 1/5: Slice 5/5 -------
  93. -> Reset the GAN
  94. -> Train generator for synthetic samples
  95. -> create 2156 synthetic samples
  96. -> test with 'LR'
  97. LR tn, fp: 502, 54
  98. LR fn, tp: 0, 21
  99. LR f1 score: 0.438
  100. LR cohens kappa score: 0.404
  101. LR average precision score: 0.927
  102. -> test with 'GB'
  103. GB tn, fp: 538, 18
  104. GB fn, tp: 0, 21
  105. GB f1 score: 0.700
  106. GB cohens kappa score: 0.685
  107. -> test with 'KNN'
  108. KNN tn, fp: 546, 10
  109. KNN fn, tp: 0, 21
  110. KNN f1 score: 0.808
  111. KNN cohens kappa score: 0.799
  112. ====== Step 2/5 =======
  113. -> Shuffling data
  114. -> Spliting data to slices
  115. ------ Step 2/5: Slice 1/5 -------
  116. -> Reset the GAN
  117. -> Train generator for synthetic samples
  118. -> create 2152 synthetic samples
  119. -> test with 'LR'
  120. LR tn, fp: 483, 77
  121. LR fn, tp: 0, 21
  122. LR f1 score: 0.353
  123. LR cohens kappa score: 0.312
  124. LR average precision score: 0.871
  125. -> test with 'GB'
  126. GB tn, fp: 532, 28
  127. GB fn, tp: 0, 21
  128. GB f1 score: 0.600
  129. GB cohens kappa score: 0.579
  130. -> test with 'KNN'
  131. KNN tn, fp: 547, 13
  132. KNN fn, tp: 0, 21
  133. KNN f1 score: 0.764
  134. KNN cohens kappa score: 0.753
  135. ------ Step 2/5: Slice 2/5 -------
  136. -> Reset the GAN
  137. -> Train generator for synthetic samples
  138. -> create 2152 synthetic samples
  139. -> test with 'LR'
  140. LR tn, fp: 504, 56
  141. LR fn, tp: 0, 21
  142. LR f1 score: 0.429
  143. LR cohens kappa score: 0.394
  144. LR average precision score: 0.852
  145. -> test with 'GB'
  146. GB tn, fp: 533, 27
  147. GB fn, tp: 0, 21
  148. GB f1 score: 0.609
  149. GB cohens kappa score: 0.588
  150. -> test with 'KNN'
  151. KNN tn, fp: 552, 8
  152. KNN fn, tp: 0, 21
  153. KNN f1 score: 0.840
  154. KNN cohens kappa score: 0.833
  155. ------ Step 2/5: Slice 3/5 -------
  156. -> Reset the GAN
  157. -> Train generator for synthetic samples
  158. -> create 2152 synthetic samples
  159. -> test with 'LR'
  160. LR tn, fp: 503, 57
  161. LR fn, tp: 0, 21
  162. LR f1 score: 0.424
  163. LR cohens kappa score: 0.389
  164. LR average precision score: 0.889
  165. -> test with 'GB'
  166. GB tn, fp: 539, 21
  167. GB fn, tp: 0, 21
  168. GB f1 score: 0.667
  169. GB cohens kappa score: 0.650
  170. -> test with 'KNN'
  171. KNN tn, fp: 551, 9
  172. KNN fn, tp: 0, 21
  173. KNN f1 score: 0.824
  174. KNN cohens kappa score: 0.816
  175. ------ Step 2/5: Slice 4/5 -------
  176. -> Reset the GAN
  177. -> Train generator for synthetic samples
  178. -> create 2152 synthetic samples
  179. -> test with 'LR'
  180. LR tn, fp: 491, 69
  181. LR fn, tp: 0, 21
  182. LR f1 score: 0.378
  183. LR cohens kappa score: 0.340
  184. LR average precision score: 0.852
  185. -> test with 'GB'
  186. GB tn, fp: 534, 26
  187. GB fn, tp: 0, 21
  188. GB f1 score: 0.618
  189. GB cohens kappa score: 0.598
  190. -> test with 'KNN'
  191. KNN tn, fp: 540, 20
  192. KNN fn, tp: 0, 21
  193. KNN f1 score: 0.677
  194. KNN cohens kappa score: 0.661
  195. ------ Step 2/5: Slice 5/5 -------
  196. -> Reset the GAN
  197. -> Train generator for synthetic samples
  198. -> create 2156 synthetic samples
  199. -> test with 'LR'
  200. LR tn, fp: 500, 56
  201. LR fn, tp: 0, 21
  202. LR f1 score: 0.429
  203. LR cohens kappa score: 0.394
  204. LR average precision score: 0.866
  205. -> test with 'GB'
  206. GB tn, fp: 534, 22
  207. GB fn, tp: 0, 21
  208. GB f1 score: 0.656
  209. GB cohens kappa score: 0.639
  210. -> test with 'KNN'
  211. KNN tn, fp: 548, 8
  212. KNN fn, tp: 0, 21
  213. KNN f1 score: 0.840
  214. KNN cohens kappa score: 0.833
  215. ====== Step 3/5 =======
  216. -> Shuffling data
  217. -> Spliting data to slices
  218. ------ Step 3/5: Slice 1/5 -------
  219. -> Reset the GAN
  220. -> Train generator for synthetic samples
  221. -> create 2152 synthetic samples
  222. -> test with 'LR'
  223. LR tn, fp: 506, 54
  224. LR fn, tp: 0, 21
  225. LR f1 score: 0.438
  226. LR cohens kappa score: 0.404
  227. LR average precision score: 0.920
  228. -> test with 'GB'
  229. GB tn, fp: 535, 25
  230. GB fn, tp: 0, 21
  231. GB f1 score: 0.627
  232. GB cohens kappa score: 0.607
  233. -> test with 'KNN'
  234. KNN tn, fp: 542, 18
  235. KNN fn, tp: 0, 21
  236. KNN f1 score: 0.700
  237. KNN cohens kappa score: 0.685
  238. ------ Step 3/5: Slice 2/5 -------
  239. -> Reset the GAN
  240. -> Train generator for synthetic samples
  241. -> create 2152 synthetic samples
  242. -> test with 'LR'
  243. LR tn, fp: 512, 48
  244. LR fn, tp: 0, 21
  245. LR f1 score: 0.467
  246. LR cohens kappa score: 0.435
  247. LR average precision score: 0.875
  248. -> test with 'GB'
  249. GB tn, fp: 539, 21
  250. GB fn, tp: 0, 21
  251. GB f1 score: 0.667
  252. GB cohens kappa score: 0.650
  253. -> test with 'KNN'
  254. KNN tn, fp: 552, 8
  255. KNN fn, tp: 0, 21
  256. KNN f1 score: 0.840
  257. KNN cohens kappa score: 0.833
  258. ------ Step 3/5: Slice 3/5 -------
  259. -> Reset the GAN
  260. -> Train generator for synthetic samples
  261. -> create 2152 synthetic samples
  262. -> test with 'LR'
  263. LR tn, fp: 491, 69
  264. LR fn, tp: 0, 21
  265. LR f1 score: 0.378
  266. LR cohens kappa score: 0.340
  267. LR average precision score: 0.757
  268. -> test with 'GB'
  269. GB tn, fp: 533, 27
  270. GB fn, tp: 0, 21
  271. GB f1 score: 0.609
  272. GB cohens kappa score: 0.588
  273. -> test with 'KNN'
  274. KNN tn, fp: 547, 13
  275. KNN fn, tp: 0, 21
  276. KNN f1 score: 0.764
  277. KNN cohens kappa score: 0.753
  278. ------ Step 3/5: Slice 4/5 -------
  279. -> Reset the GAN
  280. -> Train generator for synthetic samples
  281. -> create 2152 synthetic samples
  282. -> test with 'LR'
  283. LR tn, fp: 496, 64
  284. LR fn, tp: 0, 21
  285. LR f1 score: 0.396
  286. LR cohens kappa score: 0.359
  287. LR average precision score: 0.902
  288. -> test with 'GB'
  289. GB tn, fp: 543, 17
  290. GB fn, tp: 0, 21
  291. GB f1 score: 0.712
  292. GB cohens kappa score: 0.698
  293. -> test with 'KNN'
  294. KNN tn, fp: 556, 4
  295. KNN fn, tp: 1, 20
  296. KNN f1 score: 0.889
  297. KNN cohens kappa score: 0.884
  298. ------ Step 3/5: Slice 5/5 -------
  299. -> Reset the GAN
  300. -> Train generator for synthetic samples
  301. -> create 2156 synthetic samples
  302. -> test with 'LR'
  303. LR tn, fp: 481, 75
  304. LR fn, tp: 0, 21
  305. LR f1 score: 0.359
  306. LR cohens kappa score: 0.318
  307. LR average precision score: 0.844
  308. -> test with 'GB'
  309. GB tn, fp: 527, 29
  310. GB fn, tp: 0, 21
  311. GB f1 score: 0.592
  312. GB cohens kappa score: 0.569
  313. -> test with 'KNN'
  314. KNN tn, fp: 542, 14
  315. KNN fn, tp: 0, 21
  316. KNN f1 score: 0.750
  317. KNN cohens kappa score: 0.738
  318. ====== Step 4/5 =======
  319. -> Shuffling data
  320. -> Spliting data to slices
  321. ------ Step 4/5: Slice 1/5 -------
  322. -> Reset the GAN
  323. -> Train generator for synthetic samples
  324. -> create 2152 synthetic samples
  325. -> test with 'LR'
  326. LR tn, fp: 499, 61
  327. LR fn, tp: 0, 21
  328. LR f1 score: 0.408
  329. LR cohens kappa score: 0.372
  330. LR average precision score: 0.894
  331. -> test with 'GB'
  332. GB tn, fp: 533, 27
  333. GB fn, tp: 0, 21
  334. GB f1 score: 0.609
  335. GB cohens kappa score: 0.588
  336. -> test with 'KNN'
  337. KNN tn, fp: 547, 13
  338. KNN fn, tp: 0, 21
  339. KNN f1 score: 0.764
  340. KNN cohens kappa score: 0.753
  341. ------ Step 4/5: Slice 2/5 -------
  342. -> Reset the GAN
  343. -> Train generator for synthetic samples
  344. -> create 2152 synthetic samples
  345. -> test with 'LR'
  346. LR tn, fp: 486, 74
  347. LR fn, tp: 0, 21
  348. LR f1 score: 0.362
  349. LR cohens kappa score: 0.322
  350. LR average precision score: 0.910
  351. -> test with 'GB'
  352. GB tn, fp: 536, 24
  353. GB fn, tp: 0, 21
  354. GB f1 score: 0.636
  355. GB cohens kappa score: 0.618
  356. -> test with 'KNN'
  357. KNN tn, fp: 546, 14
  358. KNN fn, tp: 0, 21
  359. KNN f1 score: 0.750
  360. KNN cohens kappa score: 0.738
  361. ------ Step 4/5: Slice 3/5 -------
  362. -> Reset the GAN
  363. -> Train generator for synthetic samples
  364. -> create 2152 synthetic samples
  365. -> test with 'LR'
  366. LR tn, fp: 493, 67
  367. LR fn, tp: 0, 21
  368. LR f1 score: 0.385
  369. LR cohens kappa score: 0.347
  370. LR average precision score: 0.724
  371. -> test with 'GB'
  372. GB tn, fp: 536, 24
  373. GB fn, tp: 0, 21
  374. GB f1 score: 0.636
  375. GB cohens kappa score: 0.618
  376. -> test with 'KNN'
  377. KNN tn, fp: 547, 13
  378. KNN fn, tp: 0, 21
  379. KNN f1 score: 0.764
  380. KNN cohens kappa score: 0.753
  381. ------ Step 4/5: Slice 4/5 -------
  382. -> Reset the GAN
  383. -> Train generator for synthetic samples
  384. -> create 2152 synthetic samples
  385. -> test with 'LR'
  386. LR tn, fp: 504, 56
  387. LR fn, tp: 0, 21
  388. LR f1 score: 0.429
  389. LR cohens kappa score: 0.394
  390. LR average precision score: 0.891
  391. -> test with 'GB'
  392. GB tn, fp: 537, 23
  393. GB fn, tp: 0, 21
  394. GB f1 score: 0.646
  395. GB cohens kappa score: 0.628
  396. -> test with 'KNN'
  397. KNN tn, fp: 550, 10
  398. KNN fn, tp: 0, 21
  399. KNN f1 score: 0.808
  400. KNN cohens kappa score: 0.799
  401. ------ Step 4/5: Slice 5/5 -------
  402. -> Reset the GAN
  403. -> Train generator for synthetic samples
  404. -> create 2156 synthetic samples
  405. -> test with 'LR'
  406. LR tn, fp: 499, 57
  407. LR fn, tp: 0, 21
  408. LR f1 score: 0.424
  409. LR cohens kappa score: 0.389
  410. LR average precision score: 0.906
  411. -> test with 'GB'
  412. GB tn, fp: 535, 21
  413. GB fn, tp: 0, 21
  414. GB f1 score: 0.667
  415. GB cohens kappa score: 0.650
  416. -> test with 'KNN'
  417. KNN tn, fp: 545, 11
  418. KNN fn, tp: 0, 21
  419. KNN f1 score: 0.792
  420. KNN cohens kappa score: 0.783
  421. ====== Step 5/5 =======
  422. -> Shuffling data
  423. -> Spliting data to slices
  424. ------ Step 5/5: Slice 1/5 -------
  425. -> Reset the GAN
  426. -> Train generator for synthetic samples
  427. -> create 2152 synthetic samples
  428. -> test with 'LR'
  429. LR tn, fp: 493, 67
  430. LR fn, tp: 0, 21
  431. LR f1 score: 0.385
  432. LR cohens kappa score: 0.347
  433. LR average precision score: 0.926
  434. -> test with 'GB'
  435. GB tn, fp: 529, 31
  436. GB fn, tp: 0, 21
  437. GB f1 score: 0.575
  438. GB cohens kappa score: 0.552
  439. -> test with 'KNN'
  440. KNN tn, fp: 545, 15
  441. KNN fn, tp: 0, 21
  442. KNN f1 score: 0.737
  443. KNN cohens kappa score: 0.724
  444. ------ Step 5/5: Slice 2/5 -------
  445. -> Reset the GAN
  446. -> Train generator for synthetic samples
  447. -> create 2152 synthetic samples
  448. -> test with 'LR'
  449. LR tn, fp: 504, 56
  450. LR fn, tp: 0, 21
  451. LR f1 score: 0.429
  452. LR cohens kappa score: 0.394
  453. LR average precision score: 0.844
  454. -> test with 'GB'
  455. GB tn, fp: 535, 25
  456. GB fn, tp: 0, 21
  457. GB f1 score: 0.627
  458. GB cohens kappa score: 0.607
  459. -> test with 'KNN'
  460. KNN tn, fp: 548, 12
  461. KNN fn, tp: 0, 21
  462. KNN f1 score: 0.778
  463. KNN cohens kappa score: 0.768
  464. ------ Step 5/5: Slice 3/5 -------
  465. -> Reset the GAN
  466. -> Train generator for synthetic samples
  467. -> create 2152 synthetic samples
  468. -> test with 'LR'
  469. LR tn, fp: 487, 73
  470. LR fn, tp: 0, 21
  471. LR f1 score: 0.365
  472. LR cohens kappa score: 0.325
  473. LR average precision score: 0.810
  474. -> test with 'GB'
  475. GB tn, fp: 540, 20
  476. GB fn, tp: 0, 21
  477. GB f1 score: 0.677
  478. GB cohens kappa score: 0.661
  479. -> test with 'KNN'
  480. KNN tn, fp: 547, 13
  481. KNN fn, tp: 0, 21
  482. KNN f1 score: 0.764
  483. KNN cohens kappa score: 0.753
  484. ------ Step 5/5: Slice 4/5 -------
  485. -> Reset the GAN
  486. -> Train generator for synthetic samples
  487. -> create 2152 synthetic samples
  488. -> test with 'LR'
  489. LR tn, fp: 484, 76
  490. LR fn, tp: 0, 21
  491. LR f1 score: 0.356
  492. LR cohens kappa score: 0.315
  493. LR average precision score: 0.817
  494. -> test with 'GB'
  495. GB tn, fp: 536, 24
  496. GB fn, tp: 0, 21
  497. GB f1 score: 0.636
  498. GB cohens kappa score: 0.618
  499. -> test with 'KNN'
  500. KNN tn, fp: 551, 9
  501. KNN fn, tp: 0, 21
  502. KNN f1 score: 0.824
  503. KNN cohens kappa score: 0.816
  504. ------ Step 5/5: Slice 5/5 -------
  505. -> Reset the GAN
  506. -> Train generator for synthetic samples
  507. -> create 2156 synthetic samples
  508. -> test with 'LR'
  509. LR tn, fp: 498, 58
  510. LR fn, tp: 0, 21
  511. LR f1 score: 0.420
  512. LR cohens kappa score: 0.385
  513. LR average precision score: 0.898
  514. -> test with 'GB'
  515. GB tn, fp: 533, 23
  516. GB fn, tp: 0, 21
  517. GB f1 score: 0.646
  518. GB cohens kappa score: 0.628
  519. -> test with 'KNN'
  520. KNN tn, fp: 545, 11
  521. KNN fn, tp: 0, 21
  522. KNN f1 score: 0.792
  523. KNN cohens kappa score: 0.783
  524. ### Exercise is done.
  525. -----[ LR ]-----
  526. maximum:
  527. LR tn, fp: 512, 77
  528. LR fn, tp: 0, 21
  529. LR f1 score: 0.467
  530. LR cohens kappa score: 0.435
  531. LR average precision score: 0.927
  532. average:
  533. LR tn, fp: 495.76, 63.44
  534. LR fn, tp: 0.0, 21.0
  535. LR f1 score: 0.401
  536. LR cohens kappa score: 0.364
  537. LR average precision score: 0.864
  538. minimum:
  539. LR tn, fp: 481, 48
  540. LR fn, tp: 0, 21
  541. LR f1 score: 0.353
  542. LR cohens kappa score: 0.312
  543. LR average precision score: 0.724
  544. -----[ GB ]-----
  545. maximum:
  546. GB tn, fp: 543, 32
  547. GB fn, tp: 0, 21
  548. GB f1 score: 0.712
  549. GB cohens kappa score: 0.698
  550. average:
  551. GB tn, fp: 534.92, 24.28
  552. GB fn, tp: 0.0, 21.0
  553. GB f1 score: 0.636
  554. GB cohens kappa score: 0.617
  555. minimum:
  556. GB tn, fp: 527, 17
  557. GB fn, tp: 0, 21
  558. GB f1 score: 0.568
  559. GB cohens kappa score: 0.544
  560. -----[ KNN ]-----
  561. maximum:
  562. KNN tn, fp: 556, 20
  563. KNN fn, tp: 1, 21
  564. KNN f1 score: 0.913
  565. KNN cohens kappa score: 0.909
  566. average:
  567. KNN tn, fp: 547.6, 11.6
  568. KNN fn, tp: 0.12, 20.88
  569. KNN f1 score: 0.784
  570. KNN cohens kappa score: 0.774
  571. minimum:
  572. KNN tn, fp: 540, 4
  573. KNN fn, tp: 0, 20
  574. KNN f1 score: 0.677
  575. KNN cohens kappa score: 0.661