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- ///////////////////////////////////////////
- // Running ctGAN on folding_abalone9-18
- ///////////////////////////////////////////
- Load 'data_input/folding_abalone9-18'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 4, 5
- LR f1 score: 0.500
- LR cohens kappa score: 0.464
- LR average precision score: 0.554
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 4, 5
- GB f1 score: 0.556
- GB cohens kappa score: 0.527
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 136, 2
- LR fn, tp: 7, 2
- LR f1 score: 0.308
- LR cohens kappa score: 0.281
- LR average precision score: 0.363
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 6, 3
- GB f1 score: 0.400
- GB cohens kappa score: 0.369
- -> test with 'KNN'
- KNN tn, fp: 135, 3
- KNN fn, tp: 8, 1
- KNN f1 score: 0.154
- KNN cohens kappa score: 0.121
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 130, 8
- LR fn, tp: 8, 1
- LR f1 score: 0.111
- LR cohens kappa score: 0.053
- LR average precision score: 0.072
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 7, 2
- GB f1 score: 0.286
- GB cohens kappa score: 0.253
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 8, 1
- KNN f1 score: 0.200
- KNN cohens kappa score: 0.190
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 133, 5
- LR fn, tp: 5, 4
- LR f1 score: 0.444
- LR cohens kappa score: 0.408
- LR average precision score: 0.390
- -> test with 'GB'
- GB tn, fp: 137, 1
- GB fn, tp: 7, 2
- GB f1 score: 0.333
- GB cohens kappa score: 0.312
- -> test with 'KNN'
- KNN tn, fp: 137, 1
- KNN fn, tp: 7, 2
- KNN f1 score: 0.333
- KNN cohens kappa score: 0.312
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 134, 3
- LR fn, tp: 5, 1
- LR f1 score: 0.200
- LR cohens kappa score: 0.172
- LR average precision score: 0.159
- -> test with 'GB'
- GB tn, fp: 137, 0
- GB fn, tp: 6, 0
- GB f1 score: 0.000
- GB cohens kappa score: 0.000
- -> test with 'KNN'
- KNN tn, fp: 137, 0
- KNN fn, tp: 5, 1
- KNN f1 score: 0.286
- KNN cohens kappa score: 0.277
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 136, 2
- LR fn, tp: 6, 3
- LR f1 score: 0.429
- LR cohens kappa score: 0.402
- LR average precision score: 0.470
- -> test with 'GB'
- GB tn, fp: 137, 1
- GB fn, tp: 7, 2
- GB f1 score: 0.333
- GB cohens kappa score: 0.312
- -> test with 'KNN'
- KNN tn, fp: 137, 1
- KNN fn, tp: 8, 1
- KNN f1 score: 0.182
- KNN cohens kappa score: 0.163
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 125, 13
- LR fn, tp: 7, 2
- LR f1 score: 0.167
- LR cohens kappa score: 0.098
- LR average precision score: 0.234
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 6, 3
- GB f1 score: 0.353
- GB cohens kappa score: 0.313
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 8, 1
- KNN f1 score: 0.200
- KNN cohens kappa score: 0.190
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 7
- LR fn, tp: 8, 1
- LR f1 score: 0.118
- LR cohens kappa score: 0.064
- LR average precision score: 0.089
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 7, 2
- GB f1 score: 0.267
- GB cohens kappa score: 0.229
- -> test with 'KNN'
- KNN tn, fp: 135, 3
- KNN fn, tp: 7, 2
- KNN f1 score: 0.286
- KNN cohens kappa score: 0.253
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 128, 10
- LR fn, tp: 3, 6
- LR f1 score: 0.480
- LR cohens kappa score: 0.436
- LR average precision score: 0.651
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 5, 4
- GB f1 score: 0.500
- GB cohens kappa score: 0.472
- -> test with 'KNN'
- KNN tn, fp: 137, 1
- KNN fn, tp: 7, 2
- KNN f1 score: 0.333
- KNN cohens kappa score: 0.312
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 126, 11
- LR fn, tp: 3, 3
- LR f1 score: 0.300
- LR cohens kappa score: 0.256
- LR average precision score: 0.205
- -> test with 'GB'
- GB tn, fp: 129, 8
- GB fn, tp: 4, 2
- GB f1 score: 0.250
- GB cohens kappa score: 0.208
- -> test with 'KNN'
- KNN tn, fp: 137, 0
- KNN fn, tp: 5, 1
- KNN f1 score: 0.286
- KNN cohens kappa score: 0.277
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 6, 3
- LR f1 score: 0.333
- LR cohens kappa score: 0.290
- LR average precision score: 0.398
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 8, 1
- GB f1 score: 0.154
- GB cohens kappa score: 0.121
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 8, 1
- KNN f1 score: 0.200
- KNN cohens kappa score: 0.190
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 123, 15
- LR fn, tp: 7, 2
- LR f1 score: 0.154
- LR cohens kappa score: 0.080
- LR average precision score: 0.103
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 6, 3
- GB f1 score: 0.353
- GB cohens kappa score: 0.313
- -> test with 'KNN'
- KNN tn, fp: 136, 2
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: -0.023
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 137, 1
- LR fn, tp: 5, 4
- LR f1 score: 0.571
- LR cohens kappa score: 0.552
- LR average precision score: 0.617
- -> test with 'GB'
- GB tn, fp: 136, 2
- GB fn, tp: 7, 2
- GB f1 score: 0.308
- GB cohens kappa score: 0.281
- -> test with 'KNN'
- KNN tn, fp: 137, 1
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: -0.012
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 7
- LR fn, tp: 4, 5
- LR f1 score: 0.476
- LR cohens kappa score: 0.437
- LR average precision score: 0.584
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 4, 5
- GB f1 score: 0.526
- GB cohens kappa score: 0.494
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 6, 3
- KNN f1 score: 0.500
- KNN cohens kappa score: 0.484
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 120, 17
- LR fn, tp: 5, 1
- LR f1 score: 0.083
- LR cohens kappa score: 0.022
- LR average precision score: 0.224
- -> test with 'GB'
- GB tn, fp: 133, 4
- GB fn, tp: 5, 1
- GB f1 score: 0.182
- GB cohens kappa score: 0.149
- -> test with 'KNN'
- KNN tn, fp: 133, 4
- KNN fn, tp: 5, 1
- KNN f1 score: 0.182
- KNN cohens kappa score: 0.149
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 7
- LR fn, tp: 5, 4
- LR f1 score: 0.400
- LR cohens kappa score: 0.357
- LR average precision score: 0.514
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 6, 3
- GB f1 score: 0.400
- GB cohens kappa score: 0.369
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 7, 2
- KNN f1 score: 0.364
- KNN cohens kappa score: 0.349
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 119, 19
- LR fn, tp: 4, 5
- LR f1 score: 0.303
- LR cohens kappa score: 0.235
- LR average precision score: 0.394
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 6, 3
- GB f1 score: 0.353
- GB cohens kappa score: 0.313
- -> test with 'KNN'
- KNN tn, fp: 137, 1
- KNN fn, tp: 7, 2
- KNN f1 score: 0.333
- KNN cohens kappa score: 0.312
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 137, 1
- LR fn, tp: 5, 4
- LR f1 score: 0.571
- LR cohens kappa score: 0.552
- LR average precision score: 0.580
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 6, 3
- GB f1 score: 0.353
- GB cohens kappa score: 0.313
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 111, 27
- LR fn, tp: 5, 4
- LR f1 score: 0.200
- LR cohens kappa score: 0.116
- LR average precision score: 0.204
- -> test with 'GB'
- GB tn, fp: 136, 2
- GB fn, tp: 7, 2
- GB f1 score: 0.308
- GB cohens kappa score: 0.281
- -> test with 'KNN'
- KNN tn, fp: 136, 2
- KNN fn, tp: 8, 1
- KNN f1 score: 0.167
- KNN cohens kappa score: 0.140
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 6
- LR fn, tp: 3, 3
- LR f1 score: 0.400
- LR cohens kappa score: 0.368
- LR average precision score: 0.361
- -> test with 'GB'
- GB tn, fp: 130, 7
- GB fn, tp: 5, 1
- GB f1 score: 0.143
- GB cohens kappa score: 0.100
- -> test with 'KNN'
- KNN tn, fp: 136, 1
- KNN fn, tp: 5, 1
- KNN f1 score: 0.250
- KNN cohens kappa score: 0.234
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 124, 14
- LR fn, tp: 9, 0
- LR f1 score: 0.000
- LR cohens kappa score: -0.081
- LR average precision score: 0.071
- -> test with 'GB'
- GB tn, fp: 129, 9
- GB fn, tp: 8, 1
- GB f1 score: 0.105
- GB cohens kappa score: 0.044
- -> test with 'KNN'
- KNN tn, fp: 134, 4
- KNN fn, tp: 8, 1
- KNN f1 score: 0.143
- KNN cohens kappa score: 0.104
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 136, 2
- LR fn, tp: 5, 4
- LR f1 score: 0.533
- LR cohens kappa score: 0.509
- LR average precision score: 0.588
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 7, 2
- GB f1 score: 0.286
- GB cohens kappa score: 0.253
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 96, 42
- LR fn, tp: 2, 7
- LR f1 score: 0.241
- LR cohens kappa score: 0.154
- LR average precision score: 0.306
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 7, 2
- GB f1 score: 0.250
- GB cohens kappa score: 0.208
- -> test with 'KNN'
- KNN tn, fp: 135, 3
- KNN fn, tp: 7, 2
- KNN f1 score: 0.286
- KNN cohens kappa score: 0.253
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 127, 11
- LR fn, tp: 5, 4
- LR f1 score: 0.333
- LR cohens kappa score: 0.278
- LR average precision score: 0.408
- -> test with 'GB'
- GB tn, fp: 136, 2
- GB fn, tp: 6, 3
- GB f1 score: 0.429
- GB cohens kappa score: 0.402
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 7, 2
- KNN f1 score: 0.364
- KNN cohens kappa score: 0.349
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 126, 11
- LR fn, tp: 4, 2
- LR f1 score: 0.211
- LR cohens kappa score: 0.162
- LR average precision score: 0.304
- -> test with 'GB'
- GB tn, fp: 137, 0
- GB fn, tp: 3, 3
- GB f1 score: 0.667
- GB cohens kappa score: 0.657
- -> test with 'KNN'
- KNN tn, fp: 137, 0
- KNN fn, tp: 5, 1
- KNN f1 score: 0.286
- KNN cohens kappa score: 0.277
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 137, 42
- LR fn, tp: 9, 7
- LR f1 score: 0.571
- LR cohens kappa score: 0.552
- LR average precision score: 0.651
- average:
- LR tn, fp: 127.68, 10.12
- LR fn, tp: 5.2, 3.2
- LR f1 score: 0.315
- LR cohens kappa score: 0.267
- LR average precision score: 0.354
- minimum:
- LR tn, fp: 96, 1
- LR fn, tp: 2, 0
- LR f1 score: 0.000
- LR cohens kappa score: -0.081
- LR average precision score: 0.071
- -----[ GB ]-----
- maximum:
- GB tn, fp: 137, 9
- GB fn, tp: 8, 5
- GB f1 score: 0.667
- GB cohens kappa score: 0.657
- average:
- GB tn, fp: 134.12, 3.68
- GB fn, tp: 6.0, 2.4
- GB f1 score: 0.324
- GB cohens kappa score: 0.292
- minimum:
- GB tn, fp: 129, 0
- GB fn, tp: 3, 0
- GB f1 score: 0.000
- GB cohens kappa score: 0.000
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 138, 4
- KNN fn, tp: 9, 3
- KNN f1 score: 0.500
- KNN cohens kappa score: 0.484
- average:
- KNN tn, fp: 136.72, 1.08
- KNN fn, tp: 7.24, 1.16
- KNN f1 score: 0.213
- KNN cohens kappa score: 0.196
- minimum:
- KNN tn, fp: 133, 0
- KNN fn, tp: 5, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: -0.023
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