| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701 |
- ///////////////////////////////////////////
- // Running convGAN on folding_kr-vs-k-zero-one_vs_draw
- ///////////////////////////////////////////
- Load 'data_input/folding_kr-vs-k-zero-one_vs_draw'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 548, 12
- LR fn, tp: 2, 19
- LR f1 score: 0.731
- LR cohens kappa score: 0.719
- LR average precision score: 0.872
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 551, 9
- KNN fn, tp: 1, 20
- KNN f1 score: 0.800
- KNN cohens kappa score: 0.791
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 548, 12
- LR fn, tp: 0, 21
- LR f1 score: 0.778
- LR cohens kappa score: 0.768
- LR average precision score: 0.934
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 0, 21
- KNN f1 score: 0.955
- KNN cohens kappa score: 0.953
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 537, 23
- LR fn, tp: 0, 21
- LR f1 score: 0.646
- LR cohens kappa score: 0.628
- LR average precision score: 0.818
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 552, 8
- KNN fn, tp: 1, 20
- KNN f1 score: 0.816
- KNN cohens kappa score: 0.808
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 543, 17
- LR fn, tp: 1, 20
- LR f1 score: 0.690
- LR cohens kappa score: 0.675
- LR average precision score: 0.882
- -> test with 'GB'
- GB tn, fp: 555, 5
- GB fn, tp: 0, 21
- GB f1 score: 0.894
- GB cohens kappa score: 0.889
- -> test with 'KNN'
- KNN tn, fp: 552, 8
- KNN fn, tp: 0, 21
- KNN f1 score: 0.840
- KNN cohens kappa score: 0.833
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 536, 20
- LR fn, tp: 0, 21
- LR f1 score: 0.677
- LR cohens kappa score: 0.661
- LR average precision score: 0.964
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 550, 6
- KNN fn, tp: 0, 21
- KNN f1 score: 0.875
- KNN cohens kappa score: 0.870
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 546, 14
- LR fn, tp: 1, 20
- LR f1 score: 0.727
- LR cohens kappa score: 0.715
- LR average precision score: 0.926
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 0, 21
- GB f1 score: 0.977
- GB cohens kappa score: 0.976
- -> test with 'KNN'
- KNN tn, fp: 550, 10
- KNN fn, tp: 0, 21
- KNN f1 score: 0.808
- KNN cohens kappa score: 0.799
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 553, 7
- LR fn, tp: 2, 19
- LR f1 score: 0.809
- LR cohens kappa score: 0.801
- LR average precision score: 0.924
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 555, 5
- KNN fn, tp: 0, 21
- KNN f1 score: 0.894
- KNN cohens kappa score: 0.889
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 543, 17
- LR fn, tp: 0, 21
- LR f1 score: 0.712
- LR cohens kappa score: 0.698
- LR average precision score: 0.902
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 1, 20
- KNN f1 score: 0.930
- KNN cohens kappa score: 0.928
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 537, 23
- LR fn, tp: 0, 21
- LR f1 score: 0.646
- LR cohens kappa score: 0.628
- LR average precision score: 0.868
- -> test with 'GB'
- GB tn, fp: 558, 2
- GB fn, tp: 1, 20
- GB f1 score: 0.930
- GB cohens kappa score: 0.928
- -> test with 'KNN'
- KNN tn, fp: 550, 10
- KNN fn, tp: 1, 20
- KNN f1 score: 0.784
- KNN cohens kappa score: 0.775
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 544, 12
- LR fn, tp: 1, 20
- LR f1 score: 0.755
- LR cohens kappa score: 0.743
- LR average precision score: 0.941
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 551, 5
- KNN fn, tp: 0, 21
- KNN f1 score: 0.894
- KNN cohens kappa score: 0.889
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 546, 14
- LR fn, tp: 0, 21
- LR f1 score: 0.750
- LR cohens kappa score: 0.738
- LR average precision score: 0.935
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 552, 8
- KNN fn, tp: 0, 21
- KNN f1 score: 0.840
- KNN cohens kappa score: 0.833
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 5
- LR fn, tp: 1, 20
- LR f1 score: 0.870
- LR cohens kappa score: 0.864
- LR average precision score: 0.889
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 556, 4
- KNN fn, tp: 0, 21
- KNN f1 score: 0.913
- KNN cohens kappa score: 0.909
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 542, 18
- LR fn, tp: 1, 20
- LR f1 score: 0.678
- LR cohens kappa score: 0.662
- LR average precision score: 0.886
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 551, 9
- KNN fn, tp: 1, 20
- KNN f1 score: 0.800
- KNN cohens kappa score: 0.791
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 540, 20
- LR fn, tp: 0, 21
- LR f1 score: 0.677
- LR cohens kappa score: 0.661
- LR average precision score: 0.920
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 557, 3
- KNN fn, tp: 0, 21
- KNN f1 score: 0.933
- KNN cohens kappa score: 0.931
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 533, 23
- LR fn, tp: 0, 21
- LR f1 score: 0.646
- LR cohens kappa score: 0.628
- LR average precision score: 0.905
- -> test with 'GB'
- GB tn, fp: 555, 1
- GB fn, tp: 0, 21
- GB f1 score: 0.977
- GB cohens kappa score: 0.976
- -> test with 'KNN'
- KNN tn, fp: 548, 8
- KNN fn, tp: 0, 21
- KNN f1 score: 0.840
- KNN cohens kappa score: 0.833
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 544, 16
- LR fn, tp: 1, 20
- LR f1 score: 0.702
- LR cohens kappa score: 0.687
- LR average precision score: 0.915
- -> test with 'GB'
- GB tn, fp: 558, 2
- GB fn, tp: 0, 21
- GB f1 score: 0.955
- GB cohens kappa score: 0.953
- -> test with 'KNN'
- KNN tn, fp: 552, 8
- KNN fn, tp: 0, 21
- KNN f1 score: 0.840
- KNN cohens kappa score: 0.833
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 537, 23
- LR fn, tp: 0, 21
- LR f1 score: 0.646
- LR cohens kappa score: 0.628
- LR average precision score: 0.940
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 553, 7
- KNN fn, tp: 0, 21
- KNN f1 score: 0.857
- KNN cohens kappa score: 0.851
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 547, 13
- LR fn, tp: 4, 17
- LR f1 score: 0.667
- LR cohens kappa score: 0.652
- LR average precision score: 0.797
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 4, 17
- GB f1 score: 0.895
- GB cohens kappa score: 0.891
- -> test with 'KNN'
- KNN tn, fp: 553, 7
- KNN fn, tp: 0, 21
- KNN f1 score: 0.857
- KNN cohens kappa score: 0.851
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 539, 21
- LR fn, tp: 0, 21
- LR f1 score: 0.667
- LR cohens kappa score: 0.650
- LR average precision score: 0.894
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 554, 6
- KNN fn, tp: 1, 20
- KNN f1 score: 0.851
- KNN cohens kappa score: 0.845
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 546, 10
- LR fn, tp: 1, 20
- LR f1 score: 0.784
- LR cohens kappa score: 0.775
- LR average precision score: 0.924
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 551, 5
- KNN fn, tp: 1, 20
- KNN f1 score: 0.870
- KNN cohens kappa score: 0.864
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 540, 20
- LR fn, tp: 0, 21
- LR f1 score: 0.677
- LR cohens kappa score: 0.661
- LR average precision score: 0.954
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 555, 5
- KNN fn, tp: 0, 21
- KNN f1 score: 0.894
- KNN cohens kappa score: 0.889
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 547, 13
- LR fn, tp: 1, 20
- LR f1 score: 0.741
- LR cohens kappa score: 0.729
- LR average precision score: 0.909
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 5, 16
- GB f1 score: 0.865
- GB cohens kappa score: 0.861
- -> test with 'KNN'
- KNN tn, fp: 554, 6
- KNN fn, tp: 1, 20
- KNN f1 score: 0.851
- KNN cohens kappa score: 0.845
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 10
- LR fn, tp: 1, 20
- LR f1 score: 0.784
- LR cohens kappa score: 0.775
- LR average precision score: 0.887
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 552, 8
- KNN fn, tp: 0, 21
- KNN f1 score: 0.840
- KNN cohens kappa score: 0.833
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 539, 21
- LR fn, tp: 1, 20
- LR f1 score: 0.645
- LR cohens kappa score: 0.627
- LR average precision score: 0.875
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 551, 9
- KNN fn, tp: 0, 21
- KNN f1 score: 0.824
- KNN cohens kappa score: 0.816
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 541, 15
- LR fn, tp: 1, 20
- LR f1 score: 0.714
- LR cohens kappa score: 0.701
- LR average precision score: 0.908
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 547, 9
- KNN fn, tp: 0, 21
- KNN f1 score: 0.824
- KNN cohens kappa score: 0.816
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 555, 23
- LR fn, tp: 4, 21
- LR f1 score: 0.870
- LR cohens kappa score: 0.864
- LR average precision score: 0.964
- average:
- LR tn, fp: 543.24, 15.96
- LR fn, tp: 0.76, 20.24
- LR f1 score: 0.713
- LR cohens kappa score: 0.699
- LR average precision score: 0.903
- minimum:
- LR tn, fp: 533, 5
- LR fn, tp: 0, 17
- LR f1 score: 0.645
- LR cohens kappa score: 0.627
- LR average precision score: 0.797
- -----[ GB ]-----
- maximum:
- GB tn, fp: 560, 5
- GB fn, tp: 5, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- average:
- GB tn, fp: 558.52, 0.68
- GB fn, tp: 1.04, 19.96
- GB f1 score: 0.958
- GB cohens kappa score: 0.957
- minimum:
- GB tn, fp: 555, 0
- GB fn, tp: 0, 16
- GB f1 score: 0.865
- GB cohens kappa score: 0.861
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 558, 10
- KNN fn, tp: 1, 21
- KNN f1 score: 0.955
- KNN cohens kappa score: 0.953
- average:
- KNN tn, fp: 552.52, 6.68
- KNN fn, tp: 0.32, 20.68
- KNN f1 score: 0.857
- KNN cohens kappa score: 0.851
- minimum:
- KNN tn, fp: 547, 2
- KNN fn, tp: 0, 20
- KNN f1 score: 0.784
- KNN cohens kappa score: 0.775
|