folding_hypothyroid.log 13 KB

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  1. ///////////////////////////////////////////
  2. // Running Repeater on folding_hypothyroid
  3. ///////////////////////////////////////////
  4. Load 'data_input/folding_hypothyroid'
  5. from pickle file
  6. non empty cut in data_input/folding_hypothyroid! (1 points)
  7. Data loaded.
  8. -> Shuffling data
  9. ### Start exercise for synthetic point generator
  10. ====== Step 1/5 =======
  11. -> Shuffling data
  12. -> Spliting data to slices
  13. ------ Step 1/5: Slice 1/5 -------
  14. -> Reset the GAN
  15. -> Train generator for synthetic samples
  16. -> create 2289 synthetic samples
  17. -> test with 'LR'
  18. LR tn, fp: 521, 82
  19. LR fn, tp: 4, 27
  20. LR f1 score: 0.386
  21. LR cohens kappa score: 0.335
  22. LR average precision score: 0.473
  23. -> test with 'GB'
  24. GB tn, fp: 592, 11
  25. GB fn, tp: 3, 28
  26. GB f1 score: 0.800
  27. GB cohens kappa score: 0.788
  28. -> test with 'KNN'
  29. KNN tn, fp: 574, 29
  30. KNN fn, tp: 2, 29
  31. KNN f1 score: 0.652
  32. KNN cohens kappa score: 0.628
  33. ------ Step 1/5: Slice 2/5 -------
  34. -> Reset the GAN
  35. -> Train generator for synthetic samples
  36. -> create 2289 synthetic samples
  37. -> test with 'LR'
  38. LR tn, fp: 506, 97
  39. LR fn, tp: 2, 29
  40. LR f1 score: 0.369
  41. LR cohens kappa score: 0.316
  42. LR average precision score: 0.466
  43. -> test with 'GB'
  44. GB tn, fp: 586, 17
  45. GB fn, tp: 2, 29
  46. GB f1 score: 0.753
  47. GB cohens kappa score: 0.738
  48. -> test with 'KNN'
  49. KNN tn, fp: 566, 37
  50. KNN fn, tp: 6, 25
  51. KNN f1 score: 0.538
  52. KNN cohens kappa score: 0.505
  53. ------ Step 1/5: Slice 3/5 -------
  54. -> Reset the GAN
  55. -> Train generator for synthetic samples
  56. -> create 2289 synthetic samples
  57. -> test with 'LR'
  58. LR tn, fp: 503, 100
  59. LR fn, tp: 4, 27
  60. LR f1 score: 0.342
  61. LR cohens kappa score: 0.286
  62. LR average precision score: 0.344
  63. -> test with 'GB'
  64. GB tn, fp: 587, 16
  65. GB fn, tp: 2, 29
  66. GB f1 score: 0.763
  67. GB cohens kappa score: 0.749
  68. -> test with 'KNN'
  69. KNN tn, fp: 572, 31
  70. KNN fn, tp: 6, 25
  71. KNN f1 score: 0.575
  72. KNN cohens kappa score: 0.546
  73. ------ Step 1/5: Slice 4/5 -------
  74. -> Reset the GAN
  75. -> Train generator for synthetic samples
  76. -> create 2289 synthetic samples
  77. -> test with 'LR'
  78. LR tn, fp: 499, 104
  79. LR fn, tp: 3, 28
  80. LR f1 score: 0.344
  81. LR cohens kappa score: 0.287
  82. LR average precision score: 0.418
  83. -> test with 'GB'
  84. GB tn, fp: 597, 6
  85. GB fn, tp: 7, 24
  86. GB f1 score: 0.787
  87. GB cohens kappa score: 0.776
  88. -> test with 'KNN'
  89. KNN tn, fp: 571, 32
  90. KNN fn, tp: 11, 20
  91. KNN f1 score: 0.482
  92. KNN cohens kappa score: 0.448
  93. ------ Step 1/5: Slice 5/5 -------
  94. -> Reset the GAN
  95. -> Train generator for synthetic samples
  96. -> create 2288 synthetic samples
  97. -> test with 'LR'
  98. LR tn, fp: 509, 91
  99. LR fn, tp: 3, 24
  100. LR f1 score: 0.338
  101. LR cohens kappa score: 0.288
  102. LR average precision score: 0.523
  103. -> test with 'GB'
  104. GB tn, fp: 592, 8
  105. GB fn, tp: 3, 24
  106. GB f1 score: 0.814
  107. GB cohens kappa score: 0.804
  108. -> test with 'KNN'
  109. KNN tn, fp: 568, 32
  110. KNN fn, tp: 3, 24
  111. KNN f1 score: 0.578
  112. KNN cohens kappa score: 0.552
  113. ====== Step 2/5 =======
  114. -> Shuffling data
  115. -> Spliting data to slices
  116. ------ Step 2/5: Slice 1/5 -------
  117. -> Reset the GAN
  118. -> Train generator for synthetic samples
  119. -> create 2289 synthetic samples
  120. -> test with 'LR'
  121. LR tn, fp: 518, 85
  122. LR fn, tp: 3, 28
  123. LR f1 score: 0.389
  124. LR cohens kappa score: 0.338
  125. LR average precision score: 0.477
  126. -> test with 'GB'
  127. GB tn, fp: 590, 13
  128. GB fn, tp: 2, 29
  129. GB f1 score: 0.795
  130. GB cohens kappa score: 0.782
  131. -> test with 'KNN'
  132. KNN tn, fp: 580, 23
  133. KNN fn, tp: 6, 25
  134. KNN f1 score: 0.633
  135. KNN cohens kappa score: 0.610
  136. ------ Step 2/5: Slice 2/5 -------
  137. -> Reset the GAN
  138. -> Train generator for synthetic samples
  139. -> create 2289 synthetic samples
  140. -> test with 'LR'
  141. LR tn, fp: 520, 83
  142. LR fn, tp: 5, 26
  143. LR f1 score: 0.371
  144. LR cohens kappa score: 0.320
  145. LR average precision score: 0.410
  146. -> test with 'GB'
  147. GB tn, fp: 588, 15
  148. GB fn, tp: 3, 28
  149. GB f1 score: 0.757
  150. GB cohens kappa score: 0.742
  151. -> test with 'KNN'
  152. KNN tn, fp: 573, 30
  153. KNN fn, tp: 4, 27
  154. KNN f1 score: 0.614
  155. KNN cohens kappa score: 0.588
  156. ------ Step 2/5: Slice 3/5 -------
  157. -> Reset the GAN
  158. -> Train generator for synthetic samples
  159. -> create 2289 synthetic samples
  160. -> test with 'LR'
  161. LR tn, fp: 503, 100
  162. LR fn, tp: 2, 29
  163. LR f1 score: 0.362
  164. LR cohens kappa score: 0.308
  165. LR average precision score: 0.577
  166. -> test with 'GB'
  167. GB tn, fp: 594, 9
  168. GB fn, tp: 6, 25
  169. GB f1 score: 0.769
  170. GB cohens kappa score: 0.757
  171. -> test with 'KNN'
  172. KNN tn, fp: 569, 34
  173. KNN fn, tp: 7, 24
  174. KNN f1 score: 0.539
  175. KNN cohens kappa score: 0.508
  176. ------ Step 2/5: Slice 4/5 -------
  177. -> Reset the GAN
  178. -> Train generator for synthetic samples
  179. -> create 2289 synthetic samples
  180. -> test with 'LR'
  181. LR tn, fp: 507, 96
  182. LR fn, tp: 5, 26
  183. LR f1 score: 0.340
  184. LR cohens kappa score: 0.284
  185. LR average precision score: 0.310
  186. -> test with 'GB'
  187. GB tn, fp: 589, 14
  188. GB fn, tp: 4, 27
  189. GB f1 score: 0.750
  190. GB cohens kappa score: 0.735
  191. -> test with 'KNN'
  192. KNN tn, fp: 569, 34
  193. KNN fn, tp: 7, 24
  194. KNN f1 score: 0.539
  195. KNN cohens kappa score: 0.508
  196. ------ Step 2/5: Slice 5/5 -------
  197. -> Reset the GAN
  198. -> Train generator for synthetic samples
  199. -> create 2288 synthetic samples
  200. -> test with 'LR'
  201. LR tn, fp: 495, 105
  202. LR fn, tp: 1, 26
  203. LR f1 score: 0.329
  204. LR cohens kappa score: 0.278
  205. LR average precision score: 0.427
  206. -> test with 'GB'
  207. GB tn, fp: 591, 9
  208. GB fn, tp: 2, 25
  209. GB f1 score: 0.820
  210. GB cohens kappa score: 0.811
  211. -> test with 'KNN'
  212. KNN tn, fp: 565, 35
  213. KNN fn, tp: 5, 22
  214. KNN f1 score: 0.524
  215. KNN cohens kappa score: 0.494
  216. ====== Step 3/5 =======
  217. -> Shuffling data
  218. -> Spliting data to slices
  219. ------ Step 3/5: Slice 1/5 -------
  220. -> Reset the GAN
  221. -> Train generator for synthetic samples
  222. -> create 2289 synthetic samples
  223. -> test with 'LR'
  224. LR tn, fp: 499, 104
  225. LR fn, tp: 1, 30
  226. LR f1 score: 0.364
  227. LR cohens kappa score: 0.309
  228. LR average precision score: 0.478
  229. -> test with 'GB'
  230. GB tn, fp: 595, 8
  231. GB fn, tp: 3, 28
  232. GB f1 score: 0.836
  233. GB cohens kappa score: 0.827
  234. -> test with 'KNN'
  235. KNN tn, fp: 579, 24
  236. KNN fn, tp: 7, 24
  237. KNN f1 score: 0.608
  238. KNN cohens kappa score: 0.583
  239. ------ Step 3/5: Slice 2/5 -------
  240. -> Reset the GAN
  241. -> Train generator for synthetic samples
  242. -> create 2289 synthetic samples
  243. -> test with 'LR'
  244. LR tn, fp: 525, 78
  245. LR fn, tp: 10, 21
  246. LR f1 score: 0.323
  247. LR cohens kappa score: 0.269
  248. LR average precision score: 0.289
  249. -> test with 'GB'
  250. GB tn, fp: 588, 15
  251. GB fn, tp: 3, 28
  252. GB f1 score: 0.757
  253. GB cohens kappa score: 0.742
  254. -> test with 'KNN'
  255. KNN tn, fp: 572, 31
  256. KNN fn, tp: 6, 25
  257. KNN f1 score: 0.575
  258. KNN cohens kappa score: 0.546
  259. ------ Step 3/5: Slice 3/5 -------
  260. -> Reset the GAN
  261. -> Train generator for synthetic samples
  262. -> create 2289 synthetic samples
  263. -> test with 'LR'
  264. LR tn, fp: 509, 94
  265. LR fn, tp: 1, 30
  266. LR f1 score: 0.387
  267. LR cohens kappa score: 0.335
  268. LR average precision score: 0.548
  269. -> test with 'GB'
  270. GB tn, fp: 585, 18
  271. GB fn, tp: 3, 28
  272. GB f1 score: 0.727
  273. GB cohens kappa score: 0.710
  274. -> test with 'KNN'
  275. KNN tn, fp: 566, 37
  276. KNN fn, tp: 7, 24
  277. KNN f1 score: 0.522
  278. KNN cohens kappa score: 0.489
  279. ------ Step 3/5: Slice 4/5 -------
  280. -> Reset the GAN
  281. -> Train generator for synthetic samples
  282. -> create 2289 synthetic samples
  283. -> test with 'LR'
  284. LR tn, fp: 508, 95
  285. LR fn, tp: 2, 29
  286. LR f1 score: 0.374
  287. LR cohens kappa score: 0.321
  288. LR average precision score: 0.485
  289. -> test with 'GB'
  290. GB tn, fp: 592, 11
  291. GB fn, tp: 4, 27
  292. GB f1 score: 0.783
  293. GB cohens kappa score: 0.770
  294. -> test with 'KNN'
  295. KNN tn, fp: 570, 33
  296. KNN fn, tp: 7, 24
  297. KNN f1 score: 0.545
  298. KNN cohens kappa score: 0.515
  299. ------ Step 3/5: Slice 5/5 -------
  300. -> Reset the GAN
  301. -> Train generator for synthetic samples
  302. -> create 2288 synthetic samples
  303. -> test with 'LR'
  304. LR tn, fp: 510, 90
  305. LR fn, tp: 4, 23
  306. LR f1 score: 0.329
  307. LR cohens kappa score: 0.278
  308. LR average precision score: 0.285
  309. -> test with 'GB'
  310. GB tn, fp: 591, 9
  311. GB fn, tp: 1, 26
  312. GB f1 score: 0.839
  313. GB cohens kappa score: 0.830
  314. -> test with 'KNN'
  315. KNN tn, fp: 574, 26
  316. KNN fn, tp: 2, 25
  317. KNN f1 score: 0.641
  318. KNN cohens kappa score: 0.620
  319. ====== Step 4/5 =======
  320. -> Shuffling data
  321. -> Spliting data to slices
  322. ------ Step 4/5: Slice 1/5 -------
  323. -> Reset the GAN
  324. -> Train generator for synthetic samples
  325. -> create 2289 synthetic samples
  326. -> test with 'LR'
  327. LR tn, fp: 518, 85
  328. LR fn, tp: 3, 28
  329. LR f1 score: 0.389
  330. LR cohens kappa score: 0.338
  331. LR average precision score: 0.403
  332. -> test with 'GB'
  333. GB tn, fp: 588, 15
  334. GB fn, tp: 4, 27
  335. GB f1 score: 0.740
  336. GB cohens kappa score: 0.724
  337. -> test with 'KNN'
  338. KNN tn, fp: 570, 33
  339. KNN fn, tp: 5, 26
  340. KNN f1 score: 0.578
  341. KNN cohens kappa score: 0.549
  342. ------ Step 4/5: Slice 2/5 -------
  343. -> Reset the GAN
  344. -> Train generator for synthetic samples
  345. -> create 2289 synthetic samples
  346. -> test with 'LR'
  347. LR tn, fp: 517, 86
  348. LR fn, tp: 5, 26
  349. LR f1 score: 0.364
  350. LR cohens kappa score: 0.311
  351. LR average precision score: 0.423
  352. -> test with 'GB'
  353. GB tn, fp: 589, 14
  354. GB fn, tp: 3, 28
  355. GB f1 score: 0.767
  356. GB cohens kappa score: 0.753
  357. -> test with 'KNN'
  358. KNN tn, fp: 574, 29
  359. KNN fn, tp: 4, 27
  360. KNN f1 score: 0.621
  361. KNN cohens kappa score: 0.595
  362. ------ Step 4/5: Slice 3/5 -------
  363. -> Reset the GAN
  364. -> Train generator for synthetic samples
  365. -> create 2289 synthetic samples
  366. -> test with 'LR'
  367. LR tn, fp: 505, 98
  368. LR fn, tp: 3, 28
  369. LR f1 score: 0.357
  370. LR cohens kappa score: 0.302
  371. LR average precision score: 0.582
  372. -> test with 'GB'
  373. GB tn, fp: 595, 8
  374. GB fn, tp: 3, 28
  375. GB f1 score: 0.836
  376. GB cohens kappa score: 0.827
  377. -> test with 'KNN'
  378. KNN tn, fp: 575, 28
  379. KNN fn, tp: 5, 26
  380. KNN f1 score: 0.612
  381. KNN cohens kappa score: 0.586
  382. ------ Step 4/5: Slice 4/5 -------
  383. -> Reset the GAN
  384. -> Train generator for synthetic samples
  385. -> create 2289 synthetic samples
  386. -> test with 'LR'
  387. LR tn, fp: 492, 111
  388. LR fn, tp: 2, 29
  389. LR f1 score: 0.339
  390. LR cohens kappa score: 0.282
  391. LR average precision score: 0.429
  392. -> test with 'GB'
  393. GB tn, fp: 592, 11
  394. GB fn, tp: 2, 29
  395. GB f1 score: 0.817
  396. GB cohens kappa score: 0.806
  397. -> test with 'KNN'
  398. KNN tn, fp: 570, 33
  399. KNN fn, tp: 7, 24
  400. KNN f1 score: 0.545
  401. KNN cohens kappa score: 0.515
  402. ------ Step 4/5: Slice 5/5 -------
  403. -> Reset the GAN
  404. -> Train generator for synthetic samples
  405. -> create 2288 synthetic samples
  406. -> test with 'LR'
  407. LR tn, fp: 506, 94
  408. LR fn, tp: 3, 24
  409. LR f1 score: 0.331
  410. LR cohens kappa score: 0.281
  411. LR average precision score: 0.420
  412. -> test with 'GB'
  413. GB tn, fp: 586, 14
  414. GB fn, tp: 4, 23
  415. GB f1 score: 0.719
  416. GB cohens kappa score: 0.704
  417. -> test with 'KNN'
  418. KNN tn, fp: 565, 35
  419. KNN fn, tp: 6, 21
  420. KNN f1 score: 0.506
  421. KNN cohens kappa score: 0.476
  422. ====== Step 5/5 =======
  423. -> Shuffling data
  424. -> Spliting data to slices
  425. ------ Step 5/5: Slice 1/5 -------
  426. -> Reset the GAN
  427. -> Train generator for synthetic samples
  428. -> create 2289 synthetic samples
  429. -> test with 'LR'
  430. LR tn, fp: 507, 96
  431. LR fn, tp: 3, 28
  432. LR f1 score: 0.361
  433. LR cohens kappa score: 0.307
  434. LR average precision score: 0.437
  435. -> test with 'GB'
  436. GB tn, fp: 587, 16
  437. GB fn, tp: 3, 28
  438. GB f1 score: 0.747
  439. GB cohens kappa score: 0.731
  440. -> test with 'KNN'
  441. KNN tn, fp: 575, 28
  442. KNN fn, tp: 6, 25
  443. KNN f1 score: 0.595
  444. KNN cohens kappa score: 0.569
  445. ------ Step 5/5: Slice 2/5 -------
  446. -> Reset the GAN
  447. -> Train generator for synthetic samples
  448. -> create 2289 synthetic samples
  449. -> test with 'LR'
  450. LR tn, fp: 511, 92
  451. LR fn, tp: 4, 27
  452. LR f1 score: 0.360
  453. LR cohens kappa score: 0.306
  454. LR average precision score: 0.466
  455. -> test with 'GB'
  456. GB tn, fp: 595, 8
  457. GB fn, tp: 1, 30
  458. GB f1 score: 0.870
  459. GB cohens kappa score: 0.862
  460. -> test with 'KNN'
  461. KNN tn, fp: 570, 33
  462. KNN fn, tp: 8, 23
  463. KNN f1 score: 0.529
  464. KNN cohens kappa score: 0.497
  465. ------ Step 5/5: Slice 3/5 -------
  466. -> Reset the GAN
  467. -> Train generator for synthetic samples
  468. -> create 2289 synthetic samples
  469. -> test with 'LR'
  470. LR tn, fp: 500, 103
  471. LR fn, tp: 2, 29
  472. LR f1 score: 0.356
  473. LR cohens kappa score: 0.300
  474. LR average precision score: 0.497
  475. -> test with 'GB'
  476. GB tn, fp: 588, 15
  477. GB fn, tp: 7, 24
  478. GB f1 score: 0.686
  479. GB cohens kappa score: 0.668
  480. -> test with 'KNN'
  481. KNN tn, fp: 569, 34
  482. KNN fn, tp: 7, 24
  483. KNN f1 score: 0.539
  484. KNN cohens kappa score: 0.508
  485. ------ Step 5/5: Slice 4/5 -------
  486. -> Reset the GAN
  487. -> Train generator for synthetic samples
  488. -> create 2289 synthetic samples
  489. -> test with 'LR'
  490. LR tn, fp: 504, 99
  491. LR fn, tp: 3, 28
  492. LR f1 score: 0.354
  493. LR cohens kappa score: 0.299
  494. LR average precision score: 0.521
  495. -> test with 'GB'
  496. GB tn, fp: 594, 9
  497. GB fn, tp: 2, 29
  498. GB f1 score: 0.841
  499. GB cohens kappa score: 0.832
  500. -> test with 'KNN'
  501. KNN tn, fp: 570, 33
  502. KNN fn, tp: 6, 25
  503. KNN f1 score: 0.562
  504. KNN cohens kappa score: 0.532
  505. ------ Step 5/5: Slice 5/5 -------
  506. -> Reset the GAN
  507. -> Train generator for synthetic samples
  508. -> create 2288 synthetic samples
  509. -> test with 'LR'
  510. LR tn, fp: 519, 81
  511. LR fn, tp: 2, 25
  512. LR f1 score: 0.376
  513. LR cohens kappa score: 0.330
  514. LR average precision score: 0.309
  515. -> test with 'GB'
  516. GB tn, fp: 590, 10
  517. GB fn, tp: 5, 22
  518. GB f1 score: 0.746
  519. GB cohens kappa score: 0.733
  520. -> test with 'KNN'
  521. KNN tn, fp: 569, 31
  522. KNN fn, tp: 5, 22
  523. KNN f1 score: 0.550
  524. KNN cohens kappa score: 0.523
  525. ### Exercise is done.
  526. -----[ LR ]-----
  527. maximum:
  528. LR tn, fp: 525, 111
  529. LR fn, tp: 10, 30
  530. LR f1 score: 0.389
  531. LR cohens kappa score: 0.338
  532. LR average precision score: 0.582
  533. average:
  534. LR tn, fp: 508.44, 93.96
  535. LR fn, tp: 3.2, 27.0
  536. LR f1 score: 0.357
  537. LR cohens kappa score: 0.304
  538. LR average precision score: 0.440
  539. minimum:
  540. LR tn, fp: 492, 78
  541. LR fn, tp: 1, 21
  542. LR f1 score: 0.323
  543. LR cohens kappa score: 0.269
  544. LR average precision score: 0.285
  545. -----[ GB ]-----
  546. maximum:
  547. GB tn, fp: 597, 18
  548. GB fn, tp: 7, 30
  549. GB f1 score: 0.870
  550. GB cohens kappa score: 0.862
  551. average:
  552. GB tn, fp: 590.44, 11.96
  553. GB fn, tp: 3.28, 26.92
  554. GB f1 score: 0.781
  555. GB cohens kappa score: 0.768
  556. minimum:
  557. GB tn, fp: 585, 6
  558. GB fn, tp: 1, 22
  559. GB f1 score: 0.686
  560. GB cohens kappa score: 0.668
  561. -----[ KNN ]-----
  562. maximum:
  563. KNN tn, fp: 580, 37
  564. KNN fn, tp: 11, 29
  565. KNN f1 score: 0.652
  566. KNN cohens kappa score: 0.628
  567. average:
  568. KNN tn, fp: 571.0, 31.4
  569. KNN fn, tp: 5.8, 24.4
  570. KNN f1 score: 0.568
  571. KNN cohens kappa score: 0.540
  572. minimum:
  573. KNN tn, fp: 565, 23
  574. KNN fn, tp: 2, 20
  575. KNN f1 score: 0.482
  576. KNN cohens kappa score: 0.448