imblearn_mammography.log 13 KB

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  1. ///////////////////////////////////////////
  2. // Running Repeater on imblearn_mammography
  3. ///////////////////////////////////////////
  4. Load 'data_input/imblearn_mammography'
  5. from imblearn
  6. non empty cut in data_input/imblearn_mammography! (7 points)
  7. Data loaded.
  8. -> Shuffling data
  9. ### Start exercise for synthetic point generator
  10. ====== Step 1/5 =======
  11. -> Shuffling data
  12. -> Spliting data to slices
  13. ------ Step 1/5: Slice 1/5 -------
  14. -> Reset the GAN
  15. -> Train generator for synthetic samples
  16. -> create 8530 synthetic samples
  17. -> test with 'LR'
  18. LR tn, fp: 1897, 288
  19. LR fn, tp: 7, 45
  20. LR f1 score: 0.234
  21. LR cohens kappa score: 0.202
  22. LR average precision score: 0.558
  23. -> test with 'GB'
  24. GB tn, fp: 2110, 75
  25. GB fn, tp: 10, 42
  26. GB f1 score: 0.497
  27. GB cohens kappa score: 0.480
  28. -> test with 'KNN'
  29. KNN tn, fp: 1452, 733
  30. KNN fn, tp: 9, 43
  31. KNN f1 score: 0.104
  32. KNN cohens kappa score: 0.063
  33. ------ Step 1/5: Slice 2/5 -------
  34. -> Reset the GAN
  35. -> Train generator for synthetic samples
  36. -> create 8530 synthetic samples
  37. -> test with 'LR'
  38. LR tn, fp: 1888, 297
  39. LR fn, tp: 6, 46
  40. LR f1 score: 0.233
  41. LR cohens kappa score: 0.201
  42. LR average precision score: 0.506
  43. -> test with 'GB'
  44. GB tn, fp: 2119, 66
  45. GB fn, tp: 10, 42
  46. GB f1 score: 0.525
  47. GB cohens kappa score: 0.510
  48. -> test with 'KNN'
  49. KNN tn, fp: 1432, 753
  50. KNN fn, tp: 8, 44
  51. KNN f1 score: 0.104
  52. KNN cohens kappa score: 0.063
  53. ------ Step 1/5: Slice 3/5 -------
  54. -> Reset the GAN
  55. -> Train generator for synthetic samples
  56. -> create 8530 synthetic samples
  57. -> test with 'LR'
  58. LR tn, fp: 1893, 292
  59. LR fn, tp: 5, 47
  60. LR f1 score: 0.240
  61. LR cohens kappa score: 0.209
  62. LR average precision score: 0.601
  63. -> test with 'GB'
  64. GB tn, fp: 2116, 69
  65. GB fn, tp: 9, 43
  66. GB f1 score: 0.524
  67. GB cohens kappa score: 0.509
  68. -> test with 'KNN'
  69. KNN tn, fp: 1450, 735
  70. KNN fn, tp: 8, 44
  71. KNN f1 score: 0.106
  72. KNN cohens kappa score: 0.065
  73. ------ Step 1/5: Slice 4/5 -------
  74. -> Reset the GAN
  75. -> Train generator for synthetic samples
  76. -> create 8530 synthetic samples
  77. -> test with 'LR'
  78. LR tn, fp: 1905, 280
  79. LR fn, tp: 8, 44
  80. LR f1 score: 0.234
  81. LR cohens kappa score: 0.202
  82. LR average precision score: 0.373
  83. -> test with 'GB'
  84. GB tn, fp: 2106, 79
  85. GB fn, tp: 10, 42
  86. GB f1 score: 0.486
  87. GB cohens kappa score: 0.468
  88. -> test with 'KNN'
  89. KNN tn, fp: 1430, 755
  90. KNN fn, tp: 7, 45
  91. KNN f1 score: 0.106
  92. KNN cohens kappa score: 0.065
  93. ------ Step 1/5: Slice 5/5 -------
  94. -> Reset the GAN
  95. -> Train generator for synthetic samples
  96. -> create 8532 synthetic samples
  97. -> test with 'LR'
  98. LR tn, fp: 1895, 288
  99. LR fn, tp: 6, 46
  100. LR f1 score: 0.238
  101. LR cohens kappa score: 0.206
  102. LR average precision score: 0.555
  103. -> test with 'GB'
  104. GB tn, fp: 2111, 72
  105. GB fn, tp: 6, 46
  106. GB f1 score: 0.541
  107. GB cohens kappa score: 0.526
  108. -> test with 'KNN'
  109. KNN tn, fp: 1508, 675
  110. KNN fn, tp: 12, 40
  111. KNN f1 score: 0.104
  112. KNN cohens kappa score: 0.064
  113. ====== Step 2/5 =======
  114. -> Shuffling data
  115. -> Spliting data to slices
  116. ------ Step 2/5: Slice 1/5 -------
  117. -> Reset the GAN
  118. -> Train generator for synthetic samples
  119. -> create 8530 synthetic samples
  120. -> test with 'LR'
  121. LR tn, fp: 1877, 308
  122. LR fn, tp: 7, 45
  123. LR f1 score: 0.222
  124. LR cohens kappa score: 0.189
  125. LR average precision score: 0.530
  126. -> test with 'GB'
  127. GB tn, fp: 2100, 85
  128. GB fn, tp: 10, 42
  129. GB f1 score: 0.469
  130. GB cohens kappa score: 0.451
  131. -> test with 'KNN'
  132. KNN tn, fp: 1459, 726
  133. KNN fn, tp: 7, 45
  134. KNN f1 score: 0.109
  135. KNN cohens kappa score: 0.069
  136. ------ Step 2/5: Slice 2/5 -------
  137. -> Reset the GAN
  138. -> Train generator for synthetic samples
  139. -> create 8530 synthetic samples
  140. -> test with 'LR'
  141. LR tn, fp: 1880, 305
  142. LR fn, tp: 8, 44
  143. LR f1 score: 0.219
  144. LR cohens kappa score: 0.187
  145. LR average precision score: 0.499
  146. -> test with 'GB'
  147. GB tn, fp: 2107, 78
  148. GB fn, tp: 6, 46
  149. GB f1 score: 0.523
  150. GB cohens kappa score: 0.507
  151. -> test with 'KNN'
  152. KNN tn, fp: 1442, 743
  153. KNN fn, tp: 8, 44
  154. KNN f1 score: 0.105
  155. KNN cohens kappa score: 0.064
  156. ------ Step 2/5: Slice 3/5 -------
  157. -> Reset the GAN
  158. -> Train generator for synthetic samples
  159. -> create 8530 synthetic samples
  160. -> test with 'LR'
  161. LR tn, fp: 1911, 274
  162. LR fn, tp: 8, 44
  163. LR f1 score: 0.238
  164. LR cohens kappa score: 0.206
  165. LR average precision score: 0.521
  166. -> test with 'GB'
  167. GB tn, fp: 2129, 56
  168. GB fn, tp: 9, 43
  169. GB f1 score: 0.570
  170. GB cohens kappa score: 0.556
  171. -> test with 'KNN'
  172. KNN tn, fp: 1467, 718
  173. KNN fn, tp: 10, 42
  174. KNN f1 score: 0.103
  175. KNN cohens kappa score: 0.063
  176. ------ Step 2/5: Slice 4/5 -------
  177. -> Reset the GAN
  178. -> Train generator for synthetic samples
  179. -> create 8530 synthetic samples
  180. -> test with 'LR'
  181. LR tn, fp: 1912, 273
  182. LR fn, tp: 4, 48
  183. LR f1 score: 0.257
  184. LR cohens kappa score: 0.226
  185. LR average precision score: 0.533
  186. -> test with 'GB'
  187. GB tn, fp: 2116, 69
  188. GB fn, tp: 4, 48
  189. GB f1 score: 0.568
  190. GB cohens kappa score: 0.554
  191. -> test with 'KNN'
  192. KNN tn, fp: 1454, 731
  193. KNN fn, tp: 5, 47
  194. KNN f1 score: 0.113
  195. KNN cohens kappa score: 0.073
  196. ------ Step 2/5: Slice 5/5 -------
  197. -> Reset the GAN
  198. -> Train generator for synthetic samples
  199. -> create 8532 synthetic samples
  200. -> test with 'LR'
  201. LR tn, fp: 1906, 277
  202. LR fn, tp: 8, 44
  203. LR f1 score: 0.236
  204. LR cohens kappa score: 0.204
  205. LR average precision score: 0.564
  206. -> test with 'GB'
  207. GB tn, fp: 2126, 57
  208. GB fn, tp: 11, 41
  209. GB f1 score: 0.547
  210. GB cohens kappa score: 0.532
  211. -> test with 'KNN'
  212. KNN tn, fp: 1446, 737
  213. KNN fn, tp: 12, 40
  214. KNN f1 score: 0.097
  215. KNN cohens kappa score: 0.055
  216. ====== Step 3/5 =======
  217. -> Shuffling data
  218. -> Spliting data to slices
  219. ------ Step 3/5: Slice 1/5 -------
  220. -> Reset the GAN
  221. -> Train generator for synthetic samples
  222. -> create 8530 synthetic samples
  223. -> test with 'LR'
  224. LR tn, fp: 1888, 297
  225. LR fn, tp: 8, 44
  226. LR f1 score: 0.224
  227. LR cohens kappa score: 0.191
  228. LR average precision score: 0.604
  229. -> test with 'GB'
  230. GB tn, fp: 2106, 79
  231. GB fn, tp: 8, 44
  232. GB f1 score: 0.503
  233. GB cohens kappa score: 0.486
  234. -> test with 'KNN'
  235. KNN tn, fp: 1475, 710
  236. KNN fn, tp: 5, 47
  237. KNN f1 score: 0.116
  238. KNN cohens kappa score: 0.076
  239. ------ Step 3/5: Slice 2/5 -------
  240. -> Reset the GAN
  241. -> Train generator for synthetic samples
  242. -> create 8530 synthetic samples
  243. -> test with 'LR'
  244. LR tn, fp: 1907, 278
  245. LR fn, tp: 7, 45
  246. LR f1 score: 0.240
  247. LR cohens kappa score: 0.208
  248. LR average precision score: 0.420
  249. -> test with 'GB'
  250. GB tn, fp: 2123, 62
  251. GB fn, tp: 12, 40
  252. GB f1 score: 0.519
  253. GB cohens kappa score: 0.504
  254. -> test with 'KNN'
  255. KNN tn, fp: 1446, 739
  256. KNN fn, tp: 10, 42
  257. KNN f1 score: 0.101
  258. KNN cohens kappa score: 0.060
  259. ------ Step 3/5: Slice 3/5 -------
  260. -> Reset the GAN
  261. -> Train generator for synthetic samples
  262. -> create 8530 synthetic samples
  263. -> test with 'LR'
  264. LR tn, fp: 1886, 299
  265. LR fn, tp: 2, 50
  266. LR f1 score: 0.249
  267. LR cohens kappa score: 0.218
  268. LR average precision score: 0.506
  269. -> test with 'GB'
  270. GB tn, fp: 2110, 75
  271. GB fn, tp: 4, 48
  272. GB f1 score: 0.549
  273. GB cohens kappa score: 0.533
  274. -> test with 'KNN'
  275. KNN tn, fp: 1447, 738
  276. KNN fn, tp: 7, 45
  277. KNN f1 score: 0.108
  278. KNN cohens kappa score: 0.067
  279. ------ Step 3/5: Slice 4/5 -------
  280. -> Reset the GAN
  281. -> Train generator for synthetic samples
  282. -> create 8530 synthetic samples
  283. -> test with 'LR'
  284. LR tn, fp: 1902, 283
  285. LR fn, tp: 9, 43
  286. LR f1 score: 0.228
  287. LR cohens kappa score: 0.195
  288. LR average precision score: 0.501
  289. -> test with 'GB'
  290. GB tn, fp: 2113, 72
  291. GB fn, tp: 10, 42
  292. GB f1 score: 0.506
  293. GB cohens kappa score: 0.490
  294. -> test with 'KNN'
  295. KNN tn, fp: 1470, 715
  296. KNN fn, tp: 11, 41
  297. KNN f1 score: 0.101
  298. KNN cohens kappa score: 0.061
  299. ------ Step 3/5: Slice 5/5 -------
  300. -> Reset the GAN
  301. -> Train generator for synthetic samples
  302. -> create 8532 synthetic samples
  303. -> test with 'LR'
  304. LR tn, fp: 1894, 289
  305. LR fn, tp: 7, 45
  306. LR f1 score: 0.233
  307. LR cohens kappa score: 0.201
  308. LR average precision score: 0.609
  309. -> test with 'GB'
  310. GB tn, fp: 2117, 66
  311. GB fn, tp: 9, 43
  312. GB f1 score: 0.534
  313. GB cohens kappa score: 0.519
  314. -> test with 'KNN'
  315. KNN tn, fp: 1448, 735
  316. KNN fn, tp: 9, 43
  317. KNN f1 score: 0.104
  318. KNN cohens kappa score: 0.063
  319. ====== Step 4/5 =======
  320. -> Shuffling data
  321. -> Spliting data to slices
  322. ------ Step 4/5: Slice 1/5 -------
  323. -> Reset the GAN
  324. -> Train generator for synthetic samples
  325. -> create 8530 synthetic samples
  326. -> test with 'LR'
  327. LR tn, fp: 1917, 268
  328. LR fn, tp: 8, 44
  329. LR f1 score: 0.242
  330. LR cohens kappa score: 0.210
  331. LR average precision score: 0.589
  332. -> test with 'GB'
  333. GB tn, fp: 2124, 61
  334. GB fn, tp: 17, 35
  335. GB f1 score: 0.473
  336. GB cohens kappa score: 0.457
  337. -> test with 'KNN'
  338. KNN tn, fp: 1491, 694
  339. KNN fn, tp: 12, 40
  340. KNN f1 score: 0.102
  341. KNN cohens kappa score: 0.061
  342. ------ Step 4/5: Slice 2/5 -------
  343. -> Reset the GAN
  344. -> Train generator for synthetic samples
  345. -> create 8530 synthetic samples
  346. -> test with 'LR'
  347. LR tn, fp: 1899, 286
  348. LR fn, tp: 6, 46
  349. LR f1 score: 0.240
  350. LR cohens kappa score: 0.208
  351. LR average precision score: 0.442
  352. -> test with 'GB'
  353. GB tn, fp: 2116, 69
  354. GB fn, tp: 8, 44
  355. GB f1 score: 0.533
  356. GB cohens kappa score: 0.518
  357. -> test with 'KNN'
  358. KNN tn, fp: 1500, 685
  359. KNN fn, tp: 7, 45
  360. KNN f1 score: 0.115
  361. KNN cohens kappa score: 0.075
  362. ------ Step 4/5: Slice 3/5 -------
  363. -> Reset the GAN
  364. -> Train generator for synthetic samples
  365. -> create 8530 synthetic samples
  366. -> test with 'LR'
  367. LR tn, fp: 1902, 283
  368. LR fn, tp: 7, 45
  369. LR f1 score: 0.237
  370. LR cohens kappa score: 0.205
  371. LR average precision score: 0.569
  372. -> test with 'GB'
  373. GB tn, fp: 2110, 75
  374. GB fn, tp: 7, 45
  375. GB f1 score: 0.523
  376. GB cohens kappa score: 0.507
  377. -> test with 'KNN'
  378. KNN tn, fp: 1417, 768
  379. KNN fn, tp: 7, 45
  380. KNN f1 score: 0.104
  381. KNN cohens kappa score: 0.063
  382. ------ Step 4/5: Slice 4/5 -------
  383. -> Reset the GAN
  384. -> Train generator for synthetic samples
  385. -> create 8530 synthetic samples
  386. -> test with 'LR'
  387. LR tn, fp: 1901, 284
  388. LR fn, tp: 9, 43
  389. LR f1 score: 0.227
  390. LR cohens kappa score: 0.195
  391. LR average precision score: 0.477
  392. -> test with 'GB'
  393. GB tn, fp: 2115, 70
  394. GB fn, tp: 9, 43
  395. GB f1 score: 0.521
  396. GB cohens kappa score: 0.505
  397. -> test with 'KNN'
  398. KNN tn, fp: 1413, 772
  399. KNN fn, tp: 10, 42
  400. KNN f1 score: 0.097
  401. KNN cohens kappa score: 0.056
  402. ------ Step 4/5: Slice 5/5 -------
  403. -> Reset the GAN
  404. -> Train generator for synthetic samples
  405. -> create 8532 synthetic samples
  406. -> test with 'LR'
  407. LR tn, fp: 1868, 315
  408. LR fn, tp: 3, 49
  409. LR f1 score: 0.236
  410. LR cohens kappa score: 0.203
  411. LR average precision score: 0.538
  412. -> test with 'GB'
  413. GB tn, fp: 2118, 65
  414. GB fn, tp: 6, 46
  415. GB f1 score: 0.564
  416. GB cohens kappa score: 0.550
  417. -> test with 'KNN'
  418. KNN tn, fp: 1464, 719
  419. KNN fn, tp: 10, 42
  420. KNN f1 score: 0.103
  421. KNN cohens kappa score: 0.062
  422. ====== Step 5/5 =======
  423. -> Shuffling data
  424. -> Spliting data to slices
  425. ------ Step 5/5: Slice 1/5 -------
  426. -> Reset the GAN
  427. -> Train generator for synthetic samples
  428. -> create 8530 synthetic samples
  429. -> test with 'LR'
  430. LR tn, fp: 1890, 295
  431. LR fn, tp: 3, 49
  432. LR f1 score: 0.247
  433. LR cohens kappa score: 0.216
  434. LR average precision score: 0.533
  435. -> test with 'GB'
  436. GB tn, fp: 2121, 64
  437. GB fn, tp: 4, 48
  438. GB f1 score: 0.585
  439. GB cohens kappa score: 0.572
  440. -> test with 'KNN'
  441. KNN tn, fp: 1469, 716
  442. KNN fn, tp: 9, 43
  443. KNN f1 score: 0.106
  444. KNN cohens kappa score: 0.065
  445. ------ Step 5/5: Slice 2/5 -------
  446. -> Reset the GAN
  447. -> Train generator for synthetic samples
  448. -> create 8530 synthetic samples
  449. -> test with 'LR'
  450. LR tn, fp: 1904, 281
  451. LR fn, tp: 6, 46
  452. LR f1 score: 0.243
  453. LR cohens kappa score: 0.211
  454. LR average precision score: 0.482
  455. -> test with 'GB'
  456. GB tn, fp: 2107, 78
  457. GB fn, tp: 7, 45
  458. GB f1 score: 0.514
  459. GB cohens kappa score: 0.498
  460. -> test with 'KNN'
  461. KNN tn, fp: 1448, 737
  462. KNN fn, tp: 7, 45
  463. KNN f1 score: 0.108
  464. KNN cohens kappa score: 0.067
  465. ------ Step 5/5: Slice 3/5 -------
  466. -> Reset the GAN
  467. -> Train generator for synthetic samples
  468. -> create 8530 synthetic samples
  469. -> test with 'LR'
  470. LR tn, fp: 1899, 286
  471. LR fn, tp: 10, 42
  472. LR f1 score: 0.221
  473. LR cohens kappa score: 0.188
  474. LR average precision score: 0.529
  475. -> test with 'GB'
  476. GB tn, fp: 2114, 71
  477. GB fn, tp: 11, 41
  478. GB f1 score: 0.500
  479. GB cohens kappa score: 0.484
  480. -> test with 'KNN'
  481. KNN tn, fp: 1464, 721
  482. KNN fn, tp: 11, 41
  483. KNN f1 score: 0.101
  484. KNN cohens kappa score: 0.060
  485. ------ Step 5/5: Slice 4/5 -------
  486. -> Reset the GAN
  487. -> Train generator for synthetic samples
  488. -> create 8530 synthetic samples
  489. -> test with 'LR'
  490. LR tn, fp: 1888, 297
  491. LR fn, tp: 4, 48
  492. LR f1 score: 0.242
  493. LR cohens kappa score: 0.210
  494. LR average precision score: 0.521
  495. -> test with 'GB'
  496. GB tn, fp: 2109, 76
  497. GB fn, tp: 9, 43
  498. GB f1 score: 0.503
  499. GB cohens kappa score: 0.486
  500. -> test with 'KNN'
  501. KNN tn, fp: 1470, 715
  502. KNN fn, tp: 7, 45
  503. KNN f1 score: 0.111
  504. KNN cohens kappa score: 0.070
  505. ------ Step 5/5: Slice 5/5 -------
  506. -> Reset the GAN
  507. -> Train generator for synthetic samples
  508. -> create 8532 synthetic samples
  509. -> test with 'LR'
  510. LR tn, fp: 1900, 283
  511. LR fn, tp: 9, 43
  512. LR f1 score: 0.228
  513. LR cohens kappa score: 0.195
  514. LR average precision score: 0.598
  515. -> test with 'GB'
  516. GB tn, fp: 2115, 68
  517. GB fn, tp: 10, 42
  518. GB f1 score: 0.519
  519. GB cohens kappa score: 0.503
  520. -> test with 'KNN'
  521. KNN tn, fp: 1432, 751
  522. KNN fn, tp: 12, 40
  523. KNN f1 score: 0.095
  524. KNN cohens kappa score: 0.054
  525. ### Exercise is done.
  526. -----[ LR ]-----
  527. maximum:
  528. LR tn, fp: 1917, 315
  529. LR fn, tp: 10, 50
  530. LR f1 score: 0.257
  531. LR cohens kappa score: 0.226
  532. LR average precision score: 0.609
  533. average:
  534. LR tn, fp: 1896.36, 288.24
  535. LR fn, tp: 6.6, 45.4
  536. LR f1 score: 0.236
  537. LR cohens kappa score: 0.203
  538. LR average precision score: 0.526
  539. minimum:
  540. LR tn, fp: 1868, 268
  541. LR fn, tp: 2, 42
  542. LR f1 score: 0.219
  543. LR cohens kappa score: 0.187
  544. LR average precision score: 0.373
  545. -----[ GB ]-----
  546. maximum:
  547. GB tn, fp: 2129, 85
  548. GB fn, tp: 17, 48
  549. GB f1 score: 0.585
  550. GB cohens kappa score: 0.572
  551. average:
  552. GB tn, fp: 2114.32, 70.28
  553. GB fn, tp: 8.64, 43.36
  554. GB f1 score: 0.524
  555. GB cohens kappa score: 0.508
  556. minimum:
  557. GB tn, fp: 2100, 56
  558. GB fn, tp: 4, 35
  559. GB f1 score: 0.469
  560. GB cohens kappa score: 0.451
  561. -----[ KNN ]-----
  562. maximum:
  563. KNN tn, fp: 1508, 772
  564. KNN fn, tp: 12, 47
  565. KNN f1 score: 0.116
  566. KNN cohens kappa score: 0.076
  567. average:
  568. KNN tn, fp: 1455.76, 728.84
  569. KNN fn, tp: 8.8, 43.2
  570. KNN f1 score: 0.105
  571. KNN cohens kappa score: 0.064
  572. minimum:
  573. KNN tn, fp: 1413, 675
  574. KNN fn, tp: 5, 40
  575. KNN f1 score: 0.095
  576. KNN cohens kappa score: 0.054