folding_abalone9-18.log 13 KB

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  1. ///////////////////////////////////////////
  2. // Running convGAN on folding_abalone9-18
  3. ///////////////////////////////////////////
  4. Load 'data_input/folding_abalone9-18'
  5. from pickle file
  6. Data loaded.
  7. -> Shuffling data
  8. ### Start exercise for synthetic point generator
  9. ====== Step 1/5 =======
  10. -> Shuffling data
  11. -> Spliting data to slices
  12. ------ Step 1/5: Slice 1/5 -------
  13. -> Reset the GAN
  14. -> Train generator for synthetic samples
  15. -> create 518 synthetic samples
  16. -> test with 'LR'
  17. LR tn, fp: 124, 14
  18. LR fn, tp: 0, 9
  19. LR f1 score: 0.562
  20. LR cohens kappa score: 0.520
  21. LR average precision score: 0.892
  22. -> test with 'GB'
  23. GB tn, fp: 132, 6
  24. GB fn, tp: 5, 4
  25. GB f1 score: 0.421
  26. GB cohens kappa score: 0.381
  27. -> test with 'KNN'
  28. KNN tn, fp: 127, 11
  29. KNN fn, tp: 4, 5
  30. KNN f1 score: 0.400
  31. KNN cohens kappa score: 0.349
  32. ------ Step 1/5: Slice 2/5 -------
  33. -> Reset the GAN
  34. -> Train generator for synthetic samples
  35. -> create 518 synthetic samples
  36. -> test with 'LR'
  37. LR tn, fp: 129, 9
  38. LR fn, tp: 3, 6
  39. LR f1 score: 0.500
  40. LR cohens kappa score: 0.459
  41. LR average precision score: 0.575
  42. -> test with 'GB'
  43. GB tn, fp: 133, 5
  44. GB fn, tp: 6, 3
  45. GB f1 score: 0.353
  46. GB cohens kappa score: 0.313
  47. -> test with 'KNN'
  48. KNN tn, fp: 114, 24
  49. KNN fn, tp: 3, 6
  50. KNN f1 score: 0.308
  51. KNN cohens kappa score: 0.236
  52. ------ Step 1/5: Slice 3/5 -------
  53. -> Reset the GAN
  54. -> Train generator for synthetic samples
  55. -> create 518 synthetic samples
  56. -> test with 'LR'
  57. LR tn, fp: 126, 12
  58. LR fn, tp: 0, 9
  59. LR f1 score: 0.600
  60. LR cohens kappa score: 0.562
  61. LR average precision score: 0.826
  62. -> test with 'GB'
  63. GB tn, fp: 131, 7
  64. GB fn, tp: 6, 3
  65. GB f1 score: 0.316
  66. GB cohens kappa score: 0.269
  67. -> test with 'KNN'
  68. KNN tn, fp: 129, 9
  69. KNN fn, tp: 4, 5
  70. KNN f1 score: 0.435
  71. KNN cohens kappa score: 0.389
  72. ------ Step 1/5: Slice 4/5 -------
  73. -> Reset the GAN
  74. -> Train generator for synthetic samples
  75. -> create 518 synthetic samples
  76. -> test with 'LR'
  77. LR tn, fp: 126, 12
  78. LR fn, tp: 2, 7
  79. LR f1 score: 0.500
  80. LR cohens kappa score: 0.455
  81. LR average precision score: 0.542
  82. -> test with 'GB'
  83. GB tn, fp: 135, 3
  84. GB fn, tp: 5, 4
  85. GB f1 score: 0.500
  86. GB cohens kappa score: 0.472
  87. -> test with 'KNN'
  88. KNN tn, fp: 124, 14
  89. KNN fn, tp: 3, 6
  90. KNN f1 score: 0.414
  91. KNN cohens kappa score: 0.360
  92. ------ Step 1/5: Slice 5/5 -------
  93. -> Reset the GAN
  94. -> Train generator for synthetic samples
  95. -> create 516 synthetic samples
  96. -> test with 'LR'
  97. LR tn, fp: 129, 8
  98. LR fn, tp: 2, 4
  99. LR f1 score: 0.444
  100. LR cohens kappa score: 0.412
  101. LR average precision score: 0.489
  102. -> test with 'GB'
  103. GB tn, fp: 132, 5
  104. GB fn, tp: 4, 2
  105. GB f1 score: 0.308
  106. GB cohens kappa score: 0.275
  107. -> test with 'KNN'
  108. KNN tn, fp: 126, 11
  109. KNN fn, tp: 2, 4
  110. KNN f1 score: 0.381
  111. KNN cohens kappa score: 0.341
  112. ====== Step 2/5 =======
  113. -> Shuffling data
  114. -> Spliting data to slices
  115. ------ Step 2/5: Slice 1/5 -------
  116. -> Reset the GAN
  117. -> Train generator for synthetic samples
  118. -> create 518 synthetic samples
  119. -> test with 'LR'
  120. LR tn, fp: 119, 19
  121. LR fn, tp: 1, 8
  122. LR f1 score: 0.444
  123. LR cohens kappa score: 0.388
  124. LR average precision score: 0.624
  125. -> test with 'GB'
  126. GB tn, fp: 136, 2
  127. GB fn, tp: 5, 4
  128. GB f1 score: 0.533
  129. GB cohens kappa score: 0.509
  130. -> test with 'KNN'
  131. KNN tn, fp: 123, 15
  132. KNN fn, tp: 5, 4
  133. KNN f1 score: 0.286
  134. KNN cohens kappa score: 0.221
  135. ------ Step 2/5: Slice 2/5 -------
  136. -> Reset the GAN
  137. -> Train generator for synthetic samples
  138. -> create 518 synthetic samples
  139. -> test with 'LR'
  140. LR tn, fp: 131, 7
  141. LR fn, tp: 1, 8
  142. LR f1 score: 0.667
  143. LR cohens kappa score: 0.639
  144. LR average precision score: 0.782
  145. -> test with 'GB'
  146. GB tn, fp: 134, 4
  147. GB fn, tp: 5, 4
  148. GB f1 score: 0.471
  149. GB cohens kappa score: 0.438
  150. -> test with 'KNN'
  151. KNN tn, fp: 131, 7
  152. KNN fn, tp: 3, 6
  153. KNN f1 score: 0.545
  154. KNN cohens kappa score: 0.510
  155. ------ Step 2/5: Slice 3/5 -------
  156. -> Reset the GAN
  157. -> Train generator for synthetic samples
  158. -> create 518 synthetic samples
  159. -> test with 'LR'
  160. LR tn, fp: 130, 8
  161. LR fn, tp: 2, 7
  162. LR f1 score: 0.583
  163. LR cohens kappa score: 0.549
  164. LR average precision score: 0.728
  165. -> test with 'GB'
  166. GB tn, fp: 130, 8
  167. GB fn, tp: 5, 4
  168. GB f1 score: 0.381
  169. GB cohens kappa score: 0.334
  170. -> test with 'KNN'
  171. KNN tn, fp: 122, 16
  172. KNN fn, tp: 2, 7
  173. KNN f1 score: 0.438
  174. KNN cohens kappa score: 0.383
  175. ------ Step 2/5: Slice 4/5 -------
  176. -> Reset the GAN
  177. -> Train generator for synthetic samples
  178. -> create 518 synthetic samples
  179. -> test with 'LR'
  180. LR tn, fp: 125, 13
  181. LR fn, tp: 0, 9
  182. LR f1 score: 0.581
  183. LR cohens kappa score: 0.541
  184. LR average precision score: 0.720
  185. -> test with 'GB'
  186. GB tn, fp: 134, 4
  187. GB fn, tp: 5, 4
  188. GB f1 score: 0.471
  189. GB cohens kappa score: 0.438
  190. -> test with 'KNN'
  191. KNN tn, fp: 120, 18
  192. KNN fn, tp: 3, 6
  193. KNN f1 score: 0.364
  194. KNN cohens kappa score: 0.301
  195. ------ Step 2/5: Slice 5/5 -------
  196. -> Reset the GAN
  197. -> Train generator for synthetic samples
  198. -> create 516 synthetic samples
  199. -> test with 'LR'
  200. LR tn, fp: 122, 15
  201. LR fn, tp: 1, 5
  202. LR f1 score: 0.385
  203. LR cohens kappa score: 0.342
  204. LR average precision score: 0.571
  205. -> test with 'GB'
  206. GB tn, fp: 128, 9
  207. GB fn, tp: 3, 3
  208. GB f1 score: 0.333
  209. GB cohens kappa score: 0.294
  210. -> test with 'KNN'
  211. KNN tn, fp: 122, 15
  212. KNN fn, tp: 3, 3
  213. KNN f1 score: 0.250
  214. KNN cohens kappa score: 0.200
  215. ====== Step 3/5 =======
  216. -> Shuffling data
  217. -> Spliting data to slices
  218. ------ Step 3/5: Slice 1/5 -------
  219. -> Reset the GAN
  220. -> Train generator for synthetic samples
  221. -> create 518 synthetic samples
  222. -> test with 'LR'
  223. LR tn, fp: 129, 9
  224. LR fn, tp: 3, 6
  225. LR f1 score: 0.500
  226. LR cohens kappa score: 0.459
  227. LR average precision score: 0.609
  228. -> test with 'GB'
  229. GB tn, fp: 132, 6
  230. GB fn, tp: 7, 2
  231. GB f1 score: 0.235
  232. GB cohens kappa score: 0.189
  233. -> test with 'KNN'
  234. KNN tn, fp: 127, 11
  235. KNN fn, tp: 5, 4
  236. KNN f1 score: 0.333
  237. KNN cohens kappa score: 0.278
  238. ------ Step 3/5: Slice 2/5 -------
  239. -> Reset the GAN
  240. -> Train generator for synthetic samples
  241. -> create 518 synthetic samples
  242. -> test with 'LR'
  243. LR tn, fp: 132, 6
  244. LR fn, tp: 0, 9
  245. LR f1 score: 0.750
  246. LR cohens kappa score: 0.729
  247. LR average precision score: 0.897
  248. -> test with 'GB'
  249. GB tn, fp: 134, 4
  250. GB fn, tp: 2, 7
  251. GB f1 score: 0.700
  252. GB cohens kappa score: 0.678
  253. -> test with 'KNN'
  254. KNN tn, fp: 115, 23
  255. KNN fn, tp: 1, 8
  256. KNN f1 score: 0.400
  257. KNN cohens kappa score: 0.337
  258. ------ Step 3/5: Slice 3/5 -------
  259. -> Reset the GAN
  260. -> Train generator for synthetic samples
  261. -> create 518 synthetic samples
  262. -> test with 'LR'
  263. LR tn, fp: 130, 8
  264. LR fn, tp: 4, 5
  265. LR f1 score: 0.455
  266. LR cohens kappa score: 0.412
  267. LR average precision score: 0.648
  268. -> test with 'GB'
  269. GB tn, fp: 132, 6
  270. GB fn, tp: 7, 2
  271. GB f1 score: 0.235
  272. GB cohens kappa score: 0.189
  273. -> test with 'KNN'
  274. KNN tn, fp: 126, 12
  275. KNN fn, tp: 5, 4
  276. KNN f1 score: 0.320
  277. KNN cohens kappa score: 0.262
  278. ------ Step 3/5: Slice 4/5 -------
  279. -> Reset the GAN
  280. -> Train generator for synthetic samples
  281. -> create 518 synthetic samples
  282. -> test with 'LR'
  283. LR tn, fp: 117, 21
  284. LR fn, tp: 2, 7
  285. LR f1 score: 0.378
  286. LR cohens kappa score: 0.315
  287. LR average precision score: 0.656
  288. -> test with 'GB'
  289. GB tn, fp: 129, 9
  290. GB fn, tp: 6, 3
  291. GB f1 score: 0.286
  292. GB cohens kappa score: 0.232
  293. -> test with 'KNN'
  294. KNN tn, fp: 117, 21
  295. KNN fn, tp: 4, 5
  296. KNN f1 score: 0.286
  297. KNN cohens kappa score: 0.214
  298. ------ Step 3/5: Slice 5/5 -------
  299. -> Reset the GAN
  300. -> Train generator for synthetic samples
  301. -> create 516 synthetic samples
  302. -> test with 'LR'
  303. LR tn, fp: 127, 10
  304. LR fn, tp: 2, 4
  305. LR f1 score: 0.400
  306. LR cohens kappa score: 0.363
  307. LR average precision score: 0.530
  308. -> test with 'GB'
  309. GB tn, fp: 129, 8
  310. GB fn, tp: 4, 2
  311. GB f1 score: 0.250
  312. GB cohens kappa score: 0.208
  313. -> test with 'KNN'
  314. KNN tn, fp: 118, 19
  315. KNN fn, tp: 2, 4
  316. KNN f1 score: 0.276
  317. KNN cohens kappa score: 0.224
  318. ====== Step 4/5 =======
  319. -> Shuffling data
  320. -> Spliting data to slices
  321. ------ Step 4/5: Slice 1/5 -------
  322. -> Reset the GAN
  323. -> Train generator for synthetic samples
  324. -> create 518 synthetic samples
  325. -> test with 'LR'
  326. LR tn, fp: 129, 9
  327. LR fn, tp: 3, 6
  328. LR f1 score: 0.500
  329. LR cohens kappa score: 0.459
  330. LR average precision score: 0.567
  331. -> test with 'GB'
  332. GB tn, fp: 135, 3
  333. GB fn, tp: 6, 3
  334. GB f1 score: 0.400
  335. GB cohens kappa score: 0.369
  336. -> test with 'KNN'
  337. KNN tn, fp: 121, 17
  338. KNN fn, tp: 6, 3
  339. KNN f1 score: 0.207
  340. KNN cohens kappa score: 0.134
  341. ------ Step 4/5: Slice 2/5 -------
  342. -> Reset the GAN
  343. -> Train generator for synthetic samples
  344. -> create 518 synthetic samples
  345. -> test with 'LR'
  346. LR tn, fp: 124, 14
  347. LR fn, tp: 2, 7
  348. LR f1 score: 0.467
  349. LR cohens kappa score: 0.417
  350. LR average precision score: 0.706
  351. -> test with 'GB'
  352. GB tn, fp: 132, 6
  353. GB fn, tp: 4, 5
  354. GB f1 score: 0.500
  355. GB cohens kappa score: 0.464
  356. -> test with 'KNN'
  357. KNN tn, fp: 121, 17
  358. KNN fn, tp: 2, 7
  359. KNN f1 score: 0.424
  360. KNN cohens kappa score: 0.368
  361. ------ Step 4/5: Slice 3/5 -------
  362. -> Reset the GAN
  363. -> Train generator for synthetic samples
  364. -> create 518 synthetic samples
  365. -> test with 'LR'
  366. LR tn, fp: 128, 10
  367. LR fn, tp: 1, 8
  368. LR f1 score: 0.593
  369. LR cohens kappa score: 0.556
  370. LR average precision score: 0.673
  371. -> test with 'GB'
  372. GB tn, fp: 136, 2
  373. GB fn, tp: 5, 4
  374. GB f1 score: 0.533
  375. GB cohens kappa score: 0.509
  376. -> test with 'KNN'
  377. KNN tn, fp: 121, 17
  378. KNN fn, tp: 3, 6
  379. KNN f1 score: 0.375
  380. KNN cohens kappa score: 0.315
  381. ------ Step 4/5: Slice 4/5 -------
  382. -> Reset the GAN
  383. -> Train generator for synthetic samples
  384. -> create 518 synthetic samples
  385. -> test with 'LR'
  386. LR tn, fp: 123, 15
  387. LR fn, tp: 0, 9
  388. LR f1 score: 0.545
  389. LR cohens kappa score: 0.501
  390. LR average precision score: 0.967
  391. -> test with 'GB'
  392. GB tn, fp: 132, 6
  393. GB fn, tp: 5, 4
  394. GB f1 score: 0.421
  395. GB cohens kappa score: 0.381
  396. -> test with 'KNN'
  397. KNN tn, fp: 119, 19
  398. KNN fn, tp: 2, 7
  399. KNN f1 score: 0.400
  400. KNN cohens kappa score: 0.340
  401. ------ Step 4/5: Slice 5/5 -------
  402. -> Reset the GAN
  403. -> Train generator for synthetic samples
  404. -> create 516 synthetic samples
  405. -> test with 'LR'
  406. LR tn, fp: 131, 6
  407. LR fn, tp: 1, 5
  408. LR f1 score: 0.588
  409. LR cohens kappa score: 0.565
  410. LR average precision score: 0.517
  411. -> test with 'GB'
  412. GB tn, fp: 131, 6
  413. GB fn, tp: 4, 2
  414. GB f1 score: 0.286
  415. GB cohens kappa score: 0.250
  416. -> test with 'KNN'
  417. KNN tn, fp: 124, 13
  418. KNN fn, tp: 1, 5
  419. KNN f1 score: 0.417
  420. KNN cohens kappa score: 0.377
  421. ====== Step 5/5 =======
  422. -> Shuffling data
  423. -> Spliting data to slices
  424. ------ Step 5/5: Slice 1/5 -------
  425. -> Reset the GAN
  426. -> Train generator for synthetic samples
  427. -> create 518 synthetic samples
  428. -> test with 'LR'
  429. LR tn, fp: 123, 15
  430. LR fn, tp: 2, 7
  431. LR f1 score: 0.452
  432. LR cohens kappa score: 0.399
  433. LR average precision score: 0.692
  434. -> test with 'GB'
  435. GB tn, fp: 132, 6
  436. GB fn, tp: 8, 1
  437. GB f1 score: 0.125
  438. GB cohens kappa score: 0.075
  439. -> test with 'KNN'
  440. KNN tn, fp: 119, 19
  441. KNN fn, tp: 5, 4
  442. KNN f1 score: 0.250
  443. KNN cohens kappa score: 0.178
  444. ------ Step 5/5: Slice 2/5 -------
  445. -> Reset the GAN
  446. -> Train generator for synthetic samples
  447. -> create 518 synthetic samples
  448. -> test with 'LR'
  449. LR tn, fp: 126, 12
  450. LR fn, tp: 1, 8
  451. LR f1 score: 0.552
  452. LR cohens kappa score: 0.510
  453. LR average precision score: 0.707
  454. -> test with 'GB'
  455. GB tn, fp: 132, 6
  456. GB fn, tp: 6, 3
  457. GB f1 score: 0.333
  458. GB cohens kappa score: 0.290
  459. -> test with 'KNN'
  460. KNN tn, fp: 118, 20
  461. KNN fn, tp: 4, 5
  462. KNN f1 score: 0.294
  463. KNN cohens kappa score: 0.224
  464. ------ Step 5/5: Slice 3/5 -------
  465. -> Reset the GAN
  466. -> Train generator for synthetic samples
  467. -> create 518 synthetic samples
  468. -> test with 'LR'
  469. LR tn, fp: 124, 14
  470. LR fn, tp: 3, 6
  471. LR f1 score: 0.414
  472. LR cohens kappa score: 0.360
  473. LR average precision score: 0.447
  474. -> test with 'GB'
  475. GB tn, fp: 135, 3
  476. GB fn, tp: 5, 4
  477. GB f1 score: 0.500
  478. GB cohens kappa score: 0.472
  479. -> test with 'KNN'
  480. KNN tn, fp: 121, 17
  481. KNN fn, tp: 6, 3
  482. KNN f1 score: 0.207
  483. KNN cohens kappa score: 0.134
  484. ------ Step 5/5: Slice 4/5 -------
  485. -> Reset the GAN
  486. -> Train generator for synthetic samples
  487. -> create 518 synthetic samples
  488. -> test with 'LR'
  489. LR tn, fp: 127, 11
  490. LR fn, tp: 1, 8
  491. LR f1 score: 0.571
  492. LR cohens kappa score: 0.533
  493. LR average precision score: 0.849
  494. -> test with 'GB'
  495. GB tn, fp: 132, 6
  496. GB fn, tp: 4, 5
  497. GB f1 score: 0.500
  498. GB cohens kappa score: 0.464
  499. -> test with 'KNN'
  500. KNN tn, fp: 124, 14
  501. KNN fn, tp: 4, 5
  502. KNN f1 score: 0.357
  503. KNN cohens kappa score: 0.299
  504. ------ Step 5/5: Slice 5/5 -------
  505. -> Reset the GAN
  506. -> Train generator for synthetic samples
  507. -> create 516 synthetic samples
  508. -> test with 'LR'
  509. LR tn, fp: 130, 7
  510. LR fn, tp: 0, 6
  511. LR f1 score: 0.632
  512. LR cohens kappa score: 0.609
  513. LR average precision score: 0.850
  514. -> test with 'GB'
  515. GB tn, fp: 135, 2
  516. GB fn, tp: 3, 3
  517. GB f1 score: 0.545
  518. GB cohens kappa score: 0.527
  519. -> test with 'KNN'
  520. KNN tn, fp: 126, 11
  521. KNN fn, tp: 2, 4
  522. KNN f1 score: 0.381
  523. KNN cohens kappa score: 0.341
  524. ### Exercise is done.
  525. -----[ LR ]-----
  526. maximum:
  527. LR tn, fp: 132, 21
  528. LR fn, tp: 4, 9
  529. LR f1 score: 0.750
  530. LR cohens kappa score: 0.729
  531. LR average precision score: 0.967
  532. average:
  533. LR tn, fp: 126.44, 11.36
  534. LR fn, tp: 1.48, 6.92
  535. LR f1 score: 0.523
  536. LR cohens kappa score: 0.482
  537. LR average precision score: 0.683
  538. minimum:
  539. LR tn, fp: 117, 6
  540. LR fn, tp: 0, 4
  541. LR f1 score: 0.378
  542. LR cohens kappa score: 0.315
  543. LR average precision score: 0.447
  544. -----[ GB ]-----
  545. maximum:
  546. GB tn, fp: 136, 9
  547. GB fn, tp: 8, 7
  548. GB f1 score: 0.700
  549. GB cohens kappa score: 0.678
  550. average:
  551. GB tn, fp: 132.52, 5.28
  552. GB fn, tp: 5.0, 3.4
  553. GB f1 score: 0.397
  554. GB cohens kappa score: 0.361
  555. minimum:
  556. GB tn, fp: 128, 2
  557. GB fn, tp: 2, 1
  558. GB f1 score: 0.125
  559. GB cohens kappa score: 0.075
  560. -----[ KNN ]-----
  561. maximum:
  562. KNN tn, fp: 131, 24
  563. KNN fn, tp: 6, 8
  564. KNN f1 score: 0.545
  565. KNN cohens kappa score: 0.510
  566. average:
  567. KNN tn, fp: 122.2, 15.6
  568. KNN fn, tp: 3.36, 5.04
  569. KNN f1 score: 0.350
  570. KNN cohens kappa score: 0.293
  571. minimum:
  572. KNN tn, fp: 114, 7
  573. KNN fn, tp: 1, 3
  574. KNN f1 score: 0.207
  575. KNN cohens kappa score: 0.134