| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701702703704705706707708709710711712713714715716717718719720721722723724725726727728729730731732733734735736737738739740741742743744745746747748749750751752753754755756757758759760761762763764765766767768769770771772773774775776777778779780781782783784785786787788789790791792793794795796797798799800801802803804805806807808809810811812813814815816817818819820821822823824825826827828829830831832833834835836837838839840841842843844845846847848849850851852853854855856857858859860861862863864865866867868869870871872873874875876877878879880881882883884885886887888889890891892893894895896897898 |
- ///////////////////////////////////////////
- // Running CTAB-GAN on folding_yeast6
- ///////////////////////////////////////////
- Load 'data_input/folding_yeast6'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:05, 1.63it/s]
20%|██ | 2/10 [00:01<00:04, 1.80it/s]
30%|███ | 3/10 [00:01<00:03, 1.89it/s]
40%|████ | 4/10 [00:02<00:03, 1.89it/s]
50%|█████ | 5/10 [00:02<00:02, 1.88it/s]
60%|██████ | 6/10 [00:03<00:02, 1.91it/s]
70%|███████ | 7/10 [00:03<00:01, 1.93it/s]
80%|████████ | 8/10 [00:04<00:01, 1.93it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.91it/s]
100%|██████████| 10/10 [00:05<00:00, 1.89it/s]
100%|██████████| 10/10 [00:05<00:00, 1.88it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 281, 9
- LR fn, tp: 1, 6
- LR f1 score: 0.545
- LR cohens kappa score: 0.530
- LR average precision score: 0.692
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 4, 3
- RF f1 score: 0.545
- RF cohens kappa score: 0.538
- -> test with 'GB'
- GB tn, fp: 287, 3
- GB fn, tp: 3, 4
- GB f1 score: 0.571
- GB cohens kappa score: 0.561
- -> test with 'KNN'
- KNN tn, fp: 277, 13
- KNN fn, tp: 3, 4
- KNN f1 score: 0.333
- KNN cohens kappa score: 0.310
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.91it/s]
20%|██ | 2/10 [00:01<00:04, 1.93it/s]
30%|███ | 3/10 [00:01<00:03, 1.97it/s]
40%|████ | 4/10 [00:02<00:03, 1.89it/s]
50%|█████ | 5/10 [00:02<00:02, 1.93it/s]
60%|██████ | 6/10 [00:03<00:02, 1.98it/s]
70%|███████ | 7/10 [00:03<00:01, 2.00it/s]
80%|████████ | 8/10 [00:04<00:01, 1.98it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.99it/s]
100%|██████████| 10/10 [00:05<00:00, 2.00it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 274, 16
- LR fn, tp: 3, 4
- LR f1 score: 0.296
- LR cohens kappa score: 0.271
- LR average precision score: 0.286
- -> test with 'RF'
- RF tn, fp: 287, 3
- RF fn, tp: 5, 2
- RF f1 score: 0.333
- RF cohens kappa score: 0.320
- -> test with 'GB'
- GB tn, fp: 286, 4
- GB fn, tp: 4, 3
- GB f1 score: 0.429
- GB cohens kappa score: 0.415
- -> test with 'KNN'
- KNN tn, fp: 277, 13
- KNN fn, tp: 2, 5
- KNN f1 score: 0.400
- KNN cohens kappa score: 0.379
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.91it/s]
20%|██ | 2/10 [00:01<00:04, 1.90it/s]
30%|███ | 3/10 [00:01<00:03, 1.91it/s]
40%|████ | 4/10 [00:02<00:03, 1.93it/s]
50%|█████ | 5/10 [00:02<00:02, 1.97it/s]
60%|██████ | 6/10 [00:03<00:02, 1.99it/s]
70%|███████ | 7/10 [00:03<00:01, 2.00it/s]
80%|████████ | 8/10 [00:04<00:00, 2.01it/s]
90%|█████████ | 9/10 [00:04<00:00, 2.00it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 286, 4
- LR fn, tp: 4, 3
- LR f1 score: 0.429
- LR cohens kappa score: 0.415
- LR average precision score: 0.387
- -> test with 'RF'
- RF tn, fp: 290, 0
- RF fn, tp: 5, 2
- RF f1 score: 0.444
- RF cohens kappa score: 0.439
- -> test with 'GB'
- GB tn, fp: 290, 0
- GB fn, tp: 3, 4
- GB f1 score: 0.727
- GB cohens kappa score: 0.723
- -> test with 'KNN'
- KNN tn, fp: 284, 6
- KNN fn, tp: 2, 5
- KNN f1 score: 0.556
- KNN cohens kappa score: 0.542
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.90it/s]
20%|██ | 2/10 [00:01<00:03, 2.02it/s]
30%|███ | 3/10 [00:01<00:03, 1.94it/s]
40%|████ | 4/10 [00:02<00:03, 1.97it/s]
50%|█████ | 5/10 [00:02<00:02, 1.98it/s]
60%|██████ | 6/10 [00:03<00:02, 1.97it/s]
70%|███████ | 7/10 [00:03<00:01, 1.95it/s]
80%|████████ | 8/10 [00:04<00:01, 1.99it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.98it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 265, 25
- LR fn, tp: 1, 6
- LR f1 score: 0.316
- LR cohens kappa score: 0.288
- LR average precision score: 0.533
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 4, 3
- RF f1 score: 0.545
- RF cohens kappa score: 0.538
- -> test with 'GB'
- GB tn, fp: 289, 1
- GB fn, tp: 4, 3
- GB f1 score: 0.545
- GB cohens kappa score: 0.538
- -> test with 'KNN'
- KNN tn, fp: 284, 6
- KNN fn, tp: 4, 3
- KNN f1 score: 0.375
- KNN cohens kappa score: 0.358
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.86it/s]
20%|██ | 2/10 [00:01<00:04, 1.92it/s]
30%|███ | 3/10 [00:01<00:03, 1.91it/s]
40%|████ | 4/10 [00:02<00:03, 1.90it/s]
50%|█████ | 5/10 [00:02<00:02, 1.92it/s]
60%|██████ | 6/10 [00:03<00:02, 1.94it/s]
70%|███████ | 7/10 [00:03<00:01, 1.93it/s]
80%|████████ | 8/10 [00:04<00:01, 1.95it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.90it/s]
100%|██████████| 10/10 [00:05<00:00, 1.93it/s]
100%|██████████| 10/10 [00:05<00:00, 1.92it/s]
- -> create 1132 synthetic samples
- -> test with 'LR'
- LR tn, fp: 249, 40
- LR fn, tp: 0, 7
- LR f1 score: 0.259
- LR cohens kappa score: 0.227
- LR average precision score: 0.379
- -> test with 'RF'
- RF tn, fp: 288, 1
- RF fn, tp: 5, 2
- RF f1 score: 0.400
- RF cohens kappa score: 0.391
- -> test with 'GB'
- GB tn, fp: 286, 3
- GB fn, tp: 4, 3
- GB f1 score: 0.462
- GB cohens kappa score: 0.450
- -> test with 'KNN'
- KNN tn, fp: 279, 10
- KNN fn, tp: 1, 6
- KNN f1 score: 0.522
- KNN cohens kappa score: 0.505
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.87it/s]
20%|██ | 2/10 [00:01<00:04, 1.87it/s]
30%|███ | 3/10 [00:01<00:03, 1.90it/s]
40%|████ | 4/10 [00:02<00:03, 1.89it/s]
50%|█████ | 5/10 [00:02<00:02, 1.92it/s]
60%|██████ | 6/10 [00:03<00:02, 1.90it/s]
70%|███████ | 7/10 [00:03<00:01, 1.92it/s]
80%|████████ | 8/10 [00:04<00:01, 1.95it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.94it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
100%|██████████| 10/10 [00:05<00:00, 1.93it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 267, 23
- LR fn, tp: 1, 6
- LR f1 score: 0.333
- LR cohens kappa score: 0.307
- LR average precision score: 0.605
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 5, 2
- RF f1 score: 0.400
- RF cohens kappa score: 0.391
- -> test with 'GB'
- GB tn, fp: 286, 4
- GB fn, tp: 3, 4
- GB f1 score: 0.533
- GB cohens kappa score: 0.521
- -> test with 'KNN'
- KNN tn, fp: 271, 19
- KNN fn, tp: 3, 4
- KNN f1 score: 0.267
- KNN cohens kappa score: 0.239
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.94it/s]
20%|██ | 2/10 [00:01<00:04, 1.98it/s]
30%|███ | 3/10 [00:01<00:03, 1.98it/s]
40%|████ | 4/10 [00:02<00:03, 1.96it/s]
50%|█████ | 5/10 [00:02<00:02, 1.97it/s]
60%|██████ | 6/10 [00:03<00:02, 1.94it/s]
70%|███████ | 7/10 [00:03<00:01, 1.92it/s]
80%|████████ | 8/10 [00:04<00:01, 1.91it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.93it/s]
100%|██████████| 10/10 [00:05<00:00, 1.93it/s]
100%|██████████| 10/10 [00:05<00:00, 1.94it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 260, 30
- LR fn, tp: 0, 7
- LR f1 score: 0.318
- LR cohens kappa score: 0.290
- LR average precision score: 0.289
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 5, 2
- RF f1 score: 0.400
- RF cohens kappa score: 0.391
- -> test with 'GB'
- GB tn, fp: 288, 2
- GB fn, tp: 5, 2
- GB f1 score: 0.364
- GB cohens kappa score: 0.353
- -> test with 'KNN'
- KNN tn, fp: 278, 12
- KNN fn, tp: 0, 7
- KNN f1 score: 0.538
- KNN cohens kappa score: 0.522
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.97it/s]
20%|██ | 2/10 [00:01<00:04, 1.97it/s]
30%|███ | 3/10 [00:01<00:03, 1.95it/s]
40%|████ | 4/10 [00:02<00:03, 1.97it/s]
50%|█████ | 5/10 [00:02<00:02, 1.98it/s]
60%|██████ | 6/10 [00:03<00:01, 2.00it/s]
70%|███████ | 7/10 [00:03<00:01, 2.00it/s]
80%|████████ | 8/10 [00:04<00:00, 2.01it/s]
90%|█████████ | 9/10 [00:04<00:00, 2.00it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
100%|██████████| 10/10 [00:05<00:00, 1.98it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 259, 31
- LR fn, tp: 1, 6
- LR f1 score: 0.273
- LR cohens kappa score: 0.243
- LR average precision score: 0.393
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 6, 1
- RF f1 score: 0.222
- RF cohens kappa score: 0.214
- -> test with 'GB'
- GB tn, fp: 288, 2
- GB fn, tp: 4, 3
- GB f1 score: 0.500
- GB cohens kappa score: 0.490
- -> test with 'KNN'
- KNN tn, fp: 277, 13
- KNN fn, tp: 3, 4
- KNN f1 score: 0.333
- KNN cohens kappa score: 0.310
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 2.01it/s]
20%|██ | 2/10 [00:00<00:03, 2.01it/s]
30%|███ | 3/10 [00:01<00:03, 2.05it/s]
40%|████ | 4/10 [00:01<00:02, 2.01it/s]
50%|█████ | 5/10 [00:02<00:02, 2.00it/s]
60%|██████ | 6/10 [00:02<00:01, 2.02it/s]
70%|███████ | 7/10 [00:03<00:01, 2.03it/s]
80%|████████ | 8/10 [00:03<00:01, 1.98it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.95it/s]
100%|██████████| 10/10 [00:05<00:00, 1.93it/s]
100%|██████████| 10/10 [00:05<00:00, 1.98it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 265, 25
- LR fn, tp: 2, 5
- LR f1 score: 0.270
- LR cohens kappa score: 0.241
- LR average precision score: 0.338
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 5, 2
- RF f1 score: 0.400
- RF cohens kappa score: 0.391
- -> test with 'GB'
- GB tn, fp: 285, 5
- GB fn, tp: 5, 2
- GB f1 score: 0.286
- GB cohens kappa score: 0.268
- -> test with 'KNN'
- KNN tn, fp: 272, 18
- KNN fn, tp: 4, 3
- KNN f1 score: 0.214
- KNN cohens kappa score: 0.185
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.86it/s]
20%|██ | 2/10 [00:01<00:04, 1.88it/s]
30%|███ | 3/10 [00:01<00:03, 1.95it/s]
40%|████ | 4/10 [00:02<00:03, 1.99it/s]
50%|█████ | 5/10 [00:02<00:02, 1.95it/s]
60%|██████ | 6/10 [00:03<00:02, 1.92it/s]
70%|███████ | 7/10 [00:03<00:01, 1.94it/s]
80%|████████ | 8/10 [00:04<00:01, 1.96it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.92it/s]
100%|██████████| 10/10 [00:05<00:00, 1.87it/s]
100%|██████████| 10/10 [00:05<00:00, 1.91it/s]
- -> create 1132 synthetic samples
- -> test with 'LR'
- LR tn, fp: 280, 9
- LR fn, tp: 3, 4
- LR f1 score: 0.400
- LR cohens kappa score: 0.381
- LR average precision score: 0.478
- -> test with 'RF'
- RF tn, fp: 289, 0
- RF fn, tp: 5, 2
- RF f1 score: 0.444
- RF cohens kappa score: 0.439
- -> test with 'GB'
- GB tn, fp: 289, 0
- GB fn, tp: 6, 1
- GB f1 score: 0.250
- GB cohens kappa score: 0.246
- -> test with 'KNN'
- KNN tn, fp: 281, 8
- KNN fn, tp: 3, 4
- KNN f1 score: 0.421
- KNN cohens kappa score: 0.403
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 2.08it/s]
20%|██ | 2/10 [00:00<00:03, 2.02it/s]
30%|███ | 3/10 [00:01<00:03, 2.00it/s]
40%|████ | 4/10 [00:01<00:02, 2.01it/s]
50%|█████ | 5/10 [00:02<00:02, 2.02it/s]
60%|██████ | 6/10 [00:02<00:01, 2.01it/s]
70%|███████ | 7/10 [00:03<00:01, 1.97it/s]
80%|████████ | 8/10 [00:04<00:01, 1.94it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.94it/s]
100%|██████████| 10/10 [00:05<00:00, 1.95it/s]
100%|██████████| 10/10 [00:05<00:00, 1.98it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 275, 15
- LR fn, tp: 2, 5
- LR f1 score: 0.370
- LR cohens kappa score: 0.348
- LR average precision score: 0.517
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 5, 2
- RF f1 score: 0.400
- RF cohens kappa score: 0.391
- -> test with 'GB'
- GB tn, fp: 289, 1
- GB fn, tp: 3, 4
- GB f1 score: 0.667
- GB cohens kappa score: 0.660
- -> test with 'KNN'
- KNN tn, fp: 275, 15
- KNN fn, tp: 2, 5
- KNN f1 score: 0.370
- KNN cohens kappa score: 0.348
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.87it/s]
20%|██ | 2/10 [00:01<00:04, 1.84it/s]
30%|███ | 3/10 [00:01<00:03, 1.85it/s]
40%|████ | 4/10 [00:02<00:03, 1.86it/s]
50%|█████ | 5/10 [00:02<00:02, 1.87it/s]
60%|██████ | 6/10 [00:03<00:02, 1.88it/s]
70%|███████ | 7/10 [00:03<00:01, 1.88it/s]
80%|████████ | 8/10 [00:04<00:01, 1.93it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.92it/s]
100%|██████████| 10/10 [00:05<00:00, 1.92it/s]
100%|██████████| 10/10 [00:05<00:00, 1.89it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 266, 24
- LR fn, tp: 0, 7
- LR f1 score: 0.368
- LR cohens kappa score: 0.343
- LR average precision score: 0.429
- -> test with 'RF'
- RF tn, fp: 290, 0
- RF fn, tp: 3, 4
- RF f1 score: 0.727
- RF cohens kappa score: 0.723
- -> test with 'GB'
- GB tn, fp: 289, 1
- GB fn, tp: 4, 3
- GB f1 score: 0.545
- GB cohens kappa score: 0.538
- -> test with 'KNN'
- KNN tn, fp: 282, 8
- KNN fn, tp: 2, 5
- KNN f1 score: 0.500
- KNN cohens kappa score: 0.484
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.92it/s]
20%|██ | 2/10 [00:01<00:04, 1.91it/s]
30%|███ | 3/10 [00:01<00:03, 1.93it/s]
40%|████ | 4/10 [00:02<00:03, 1.98it/s]
50%|█████ | 5/10 [00:02<00:02, 2.01it/s]
60%|██████ | 6/10 [00:03<00:02, 1.99it/s]
70%|███████ | 7/10 [00:03<00:01, 2.01it/s]
80%|████████ | 8/10 [00:04<00:01, 1.97it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.96it/s]
100%|██████████| 10/10 [00:05<00:00, 1.98it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 286, 4
- LR fn, tp: 5, 2
- LR f1 score: 0.308
- LR cohens kappa score: 0.292
- LR average precision score: 0.501
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 6, 1
- RF f1 score: 0.222
- RF cohens kappa score: 0.214
- -> test with 'GB'
- GB tn, fp: 289, 1
- GB fn, tp: 6, 1
- GB f1 score: 0.222
- GB cohens kappa score: 0.214
- -> test with 'KNN'
- KNN tn, fp: 285, 5
- KNN fn, tp: 3, 4
- KNN f1 score: 0.500
- KNN cohens kappa score: 0.486
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.91it/s]
20%|██ | 2/10 [00:01<00:04, 1.93it/s]
30%|███ | 3/10 [00:01<00:03, 1.97it/s]
40%|████ | 4/10 [00:02<00:03, 1.97it/s]
50%|█████ | 5/10 [00:02<00:02, 1.98it/s]
60%|██████ | 6/10 [00:03<00:02, 1.99it/s]
70%|███████ | 7/10 [00:03<00:01, 2.02it/s]
80%|████████ | 8/10 [00:04<00:01, 1.97it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.93it/s]
100%|██████████| 10/10 [00:05<00:00, 1.91it/s]
100%|██████████| 10/10 [00:05<00:00, 1.95it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 249, 41
- LR fn, tp: 1, 6
- LR f1 score: 0.222
- LR cohens kappa score: 0.189
- LR average precision score: 0.262
- -> test with 'RF'
- RF tn, fp: 288, 2
- RF fn, tp: 4, 3
- RF f1 score: 0.500
- RF cohens kappa score: 0.490
- -> test with 'GB'
- GB tn, fp: 286, 4
- GB fn, tp: 4, 3
- GB f1 score: 0.429
- GB cohens kappa score: 0.415
- -> test with 'KNN'
- KNN tn, fp: 274, 16
- KNN fn, tp: 2, 5
- KNN f1 score: 0.357
- KNN cohens kappa score: 0.334
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.90it/s]
20%|██ | 2/10 [00:01<00:04, 1.98it/s]
30%|███ | 3/10 [00:01<00:03, 1.95it/s]
40%|████ | 4/10 [00:02<00:03, 1.97it/s]
50%|█████ | 5/10 [00:02<00:02, 1.95it/s]
60%|██████ | 6/10 [00:03<00:02, 1.98it/s]
70%|███████ | 7/10 [00:03<00:01, 2.00it/s]
80%|████████ | 8/10 [00:04<00:01, 1.96it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.93it/s]
100%|██████████| 10/10 [00:05<00:00, 1.96it/s]
100%|██████████| 10/10 [00:05<00:00, 1.96it/s]
- -> create 1132 synthetic samples
- -> test with 'LR'
- LR tn, fp: 285, 4
- LR fn, tp: 2, 5
- LR f1 score: 0.625
- LR cohens kappa score: 0.615
- LR average precision score: 0.529
- -> test with 'RF'
- RF tn, fp: 289, 0
- RF fn, tp: 7, 0
- RF f1 score: 0.000
- RF cohens kappa score: 0.000
- -> test with 'GB'
- GB tn, fp: 288, 1
- GB fn, tp: 7, 0
- GB f1 score: 0.000
- GB cohens kappa score: -0.006
- -> test with 'KNN'
- KNN tn, fp: 285, 4
- KNN fn, tp: 2, 5
- KNN f1 score: 0.625
- KNN cohens kappa score: 0.615
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:06, 1.50it/s]
20%|██ | 2/10 [00:01<00:04, 1.76it/s]
30%|███ | 3/10 [00:01<00:03, 1.90it/s]
40%|████ | 4/10 [00:02<00:03, 1.96it/s]
50%|█████ | 5/10 [00:02<00:02, 1.92it/s]
60%|██████ | 6/10 [00:03<00:02, 1.95it/s]
70%|███████ | 7/10 [00:03<00:01, 1.95it/s]
80%|████████ | 8/10 [00:04<00:01, 1.97it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.94it/s]
100%|██████████| 10/10 [00:05<00:00, 1.92it/s]
100%|██████████| 10/10 [00:05<00:00, 1.91it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 257, 33
- LR fn, tp: 0, 7
- LR f1 score: 0.298
- LR cohens kappa score: 0.269
- LR average precision score: 0.567
- -> test with 'RF'
- RF tn, fp: 290, 0
- RF fn, tp: 5, 2
- RF f1 score: 0.444
- RF cohens kappa score: 0.439
- -> test with 'GB'
- GB tn, fp: 289, 1
- GB fn, tp: 3, 4
- GB f1 score: 0.667
- GB cohens kappa score: 0.660
- -> test with 'KNN'
- KNN tn, fp: 280, 10
- KNN fn, tp: 1, 6
- KNN f1 score: 0.522
- KNN cohens kappa score: 0.506
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.88it/s]
20%|██ | 2/10 [00:01<00:04, 1.89it/s]
30%|███ | 3/10 [00:01<00:03, 1.94it/s]
40%|████ | 4/10 [00:02<00:03, 1.98it/s]
50%|█████ | 5/10 [00:02<00:02, 1.99it/s]
60%|██████ | 6/10 [00:03<00:02, 1.95it/s]
70%|███████ | 7/10 [00:03<00:01, 1.96it/s]
80%|████████ | 8/10 [00:04<00:01, 1.94it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.92it/s]
100%|██████████| 10/10 [00:05<00:00, 1.91it/s]
100%|██████████| 10/10 [00:05<00:00, 1.93it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 254, 36
- LR fn, tp: 2, 5
- LR f1 score: 0.208
- LR cohens kappa score: 0.175
- LR average precision score: 0.162
- -> test with 'RF'
- RF tn, fp: 288, 2
- RF fn, tp: 4, 3
- RF f1 score: 0.500
- RF cohens kappa score: 0.490
- -> test with 'GB'
- GB tn, fp: 287, 3
- GB fn, tp: 5, 2
- GB f1 score: 0.333
- GB cohens kappa score: 0.320
- -> test with 'KNN'
- KNN tn, fp: 277, 13
- KNN fn, tp: 2, 5
- KNN f1 score: 0.400
- KNN cohens kappa score: 0.379
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.98it/s]
20%|██ | 2/10 [00:01<00:04, 1.93it/s]
30%|███ | 3/10 [00:01<00:03, 1.91it/s]
40%|████ | 4/10 [00:02<00:03, 1.92it/s]
50%|█████ | 5/10 [00:02<00:02, 1.96it/s]
60%|██████ | 6/10 [00:03<00:02, 1.93it/s]
70%|███████ | 7/10 [00:03<00:01, 1.91it/s]
80%|████████ | 8/10 [00:04<00:01, 1.89it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.89it/s]
100%|██████████| 10/10 [00:05<00:00, 1.89it/s]
100%|██████████| 10/10 [00:05<00:00, 1.91it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 281, 9
- LR fn, tp: 2, 5
- LR f1 score: 0.476
- LR cohens kappa score: 0.459
- LR average precision score: 0.447
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 3, 4
- RF f1 score: 0.667
- RF cohens kappa score: 0.660
- -> test with 'GB'
- GB tn, fp: 286, 4
- GB fn, tp: 2, 5
- GB f1 score: 0.625
- GB cohens kappa score: 0.615
- -> test with 'KNN'
- KNN tn, fp: 278, 12
- KNN fn, tp: 2, 5
- KNN f1 score: 0.417
- KNN cohens kappa score: 0.397
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.90it/s]
20%|██ | 2/10 [00:01<00:04, 1.90it/s]
30%|███ | 3/10 [00:01<00:03, 1.79it/s]
40%|████ | 4/10 [00:02<00:03, 1.76it/s]
50%|█████ | 5/10 [00:02<00:02, 1.72it/s]
60%|██████ | 6/10 [00:03<00:02, 1.73it/s]
70%|███████ | 7/10 [00:03<00:01, 1.80it/s]
80%|████████ | 8/10 [00:04<00:01, 1.84it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.85it/s]
100%|██████████| 10/10 [00:05<00:00, 1.84it/s]
100%|██████████| 10/10 [00:05<00:00, 1.81it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 286, 4
- LR fn, tp: 2, 5
- LR f1 score: 0.625
- LR cohens kappa score: 0.615
- LR average precision score: 0.646
- -> test with 'RF'
- RF tn, fp: 290, 0
- RF fn, tp: 4, 3
- RF f1 score: 0.600
- RF cohens kappa score: 0.594
- -> test with 'GB'
- GB tn, fp: 289, 1
- GB fn, tp: 5, 2
- GB f1 score: 0.400
- GB cohens kappa score: 0.391
- -> test with 'KNN'
- KNN tn, fp: 285, 5
- KNN fn, tp: 3, 4
- KNN f1 score: 0.500
- KNN cohens kappa score: 0.486
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:05, 1.77it/s]
20%|██ | 2/10 [00:01<00:04, 1.86it/s]
30%|███ | 3/10 [00:01<00:03, 1.81it/s]
40%|████ | 4/10 [00:02<00:03, 1.81it/s]
50%|█████ | 5/10 [00:02<00:02, 1.85it/s]
60%|██████ | 6/10 [00:03<00:02, 1.87it/s]
70%|███████ | 7/10 [00:03<00:01, 1.88it/s]
80%|████████ | 8/10 [00:04<00:01, 1.88it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.89it/s]
100%|██████████| 10/10 [00:05<00:00, 1.92it/s]
100%|██████████| 10/10 [00:05<00:00, 1.88it/s]
- -> create 1132 synthetic samples
- -> test with 'LR'
- LR tn, fp: 264, 25
- LR fn, tp: 2, 5
- LR f1 score: 0.270
- LR cohens kappa score: 0.241
- LR average precision score: 0.564
- -> test with 'RF'
- RF tn, fp: 289, 0
- RF fn, tp: 4, 3
- RF f1 score: 0.600
- RF cohens kappa score: 0.594
- -> test with 'GB'
- GB tn, fp: 288, 1
- GB fn, tp: 4, 3
- GB f1 score: 0.545
- GB cohens kappa score: 0.537
- -> test with 'KNN'
- KNN tn, fp: 276, 13
- KNN fn, tp: 4, 3
- KNN f1 score: 0.261
- KNN cohens kappa score: 0.236
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 2.06it/s]
20%|██ | 2/10 [00:00<00:03, 2.05it/s]
30%|███ | 3/10 [00:01<00:03, 1.96it/s]
40%|████ | 4/10 [00:02<00:03, 1.93it/s]
50%|█████ | 5/10 [00:02<00:02, 1.91it/s]
60%|██████ | 6/10 [00:03<00:02, 1.97it/s]
70%|███████ | 7/10 [00:03<00:01, 1.96it/s]
80%|████████ | 8/10 [00:04<00:01, 1.96it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.96it/s]
100%|██████████| 10/10 [00:05<00:00, 1.99it/s]
100%|██████████| 10/10 [00:05<00:00, 1.97it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 283, 7
- LR fn, tp: 2, 5
- LR f1 score: 0.526
- LR cohens kappa score: 0.512
- LR average precision score: 0.315
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 3, 4
- RF f1 score: 0.667
- RF cohens kappa score: 0.660
- -> test with 'GB'
- GB tn, fp: 286, 4
- GB fn, tp: 3, 4
- GB f1 score: 0.533
- GB cohens kappa score: 0.521
- -> test with 'KNN'
- KNN tn, fp: 278, 12
- KNN fn, tp: 1, 6
- KNN f1 score: 0.480
- KNN cohens kappa score: 0.462
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.86it/s]
20%|██ | 2/10 [00:01<00:04, 1.87it/s]
30%|███ | 3/10 [00:01<00:03, 1.87it/s]
40%|████ | 4/10 [00:02<00:03, 1.88it/s]
50%|█████ | 5/10 [00:02<00:02, 1.87it/s]
60%|██████ | 6/10 [00:03<00:02, 1.86it/s]
70%|███████ | 7/10 [00:03<00:01, 1.84it/s]
80%|████████ | 8/10 [00:04<00:01, 1.83it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.85it/s]
100%|██████████| 10/10 [00:06<00:00, 1.25it/s]
100%|██████████| 10/10 [00:06<00:00, 1.61it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 288, 2
- LR fn, tp: 6, 1
- LR f1 score: 0.200
- LR cohens kappa score: 0.189
- LR average precision score: 0.210
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 5, 2
- RF f1 score: 0.400
- RF cohens kappa score: 0.391
- -> test with 'GB'
- GB tn, fp: 288, 2
- GB fn, tp: 5, 2
- GB f1 score: 0.364
- GB cohens kappa score: 0.353
- -> test with 'KNN'
- KNN tn, fp: 282, 8
- KNN fn, tp: 4, 3
- KNN f1 score: 0.333
- KNN cohens kappa score: 0.314
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:01<00:13, 1.45s/it]
20%|██ | 2/10 [00:01<00:07, 1.09it/s]
30%|███ | 3/10 [00:02<00:05, 1.36it/s]
40%|████ | 4/10 [00:03<00:03, 1.52it/s]
50%|█████ | 5/10 [00:03<00:03, 1.56it/s]
60%|██████ | 6/10 [00:04<00:02, 1.60it/s]
70%|███████ | 7/10 [00:04<00:01, 1.63it/s]
80%|████████ | 8/10 [00:05<00:01, 1.62it/s]
90%|█████████ | 9/10 [00:06<00:00, 1.68it/s]
100%|██████████| 10/10 [00:06<00:00, 1.72it/s]
100%|██████████| 10/10 [00:06<00:00, 1.52it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 289, 1
- LR fn, tp: 4, 3
- LR f1 score: 0.545
- LR cohens kappa score: 0.538
- LR average precision score: 0.467
- -> test with 'RF'
- RF tn, fp: 289, 1
- RF fn, tp: 2, 5
- RF f1 score: 0.769
- RF cohens kappa score: 0.764
- -> test with 'GB'
- GB tn, fp: 289, 1
- GB fn, tp: 2, 5
- GB f1 score: 0.769
- GB cohens kappa score: 0.764
- -> test with 'KNN'
- KNN tn, fp: 278, 12
- KNN fn, tp: 1, 6
- KNN f1 score: 0.480
- KNN cohens kappa score: 0.462
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:04, 1.91it/s]
20%|██ | 2/10 [00:01<00:04, 1.88it/s]
30%|███ | 3/10 [00:01<00:03, 1.88it/s]
40%|████ | 4/10 [00:02<00:03, 1.86it/s]
50%|█████ | 5/10 [00:02<00:02, 1.89it/s]
60%|██████ | 6/10 [00:03<00:02, 1.89it/s]
70%|███████ | 7/10 [00:03<00:01, 1.88it/s]
80%|████████ | 8/10 [00:04<00:01, 1.90it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.90it/s]
100%|██████████| 10/10 [00:05<00:00, 1.89it/s]
100%|██████████| 10/10 [00:05<00:00, 1.89it/s]
- -> create 1131 synthetic samples
- -> test with 'LR'
- LR tn, fp: 287, 3
- LR fn, tp: 4, 3
- LR f1 score: 0.462
- LR cohens kappa score: 0.450
- LR average precision score: 0.391
- -> test with 'RF'
- RF tn, fp: 290, 0
- RF fn, tp: 5, 2
- RF f1 score: 0.444
- RF cohens kappa score: 0.439
- -> test with 'GB'
- GB tn, fp: 289, 1
- GB fn, tp: 5, 2
- GB f1 score: 0.400
- GB cohens kappa score: 0.391
- -> test with 'KNN'
- KNN tn, fp: 284, 6
- KNN fn, tp: 3, 4
- KNN f1 score: 0.471
- KNN cohens kappa score: 0.455
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
0%| | 0/10 [00:00<?, ?it/s]
10%|█ | 1/10 [00:00<00:05, 1.69it/s]
20%|██ | 2/10 [00:01<00:04, 1.82it/s]
30%|███ | 3/10 [00:01<00:03, 1.86it/s]
40%|████ | 4/10 [00:02<00:03, 1.86it/s]
50%|█████ | 5/10 [00:02<00:02, 1.92it/s]
60%|██████ | 6/10 [00:03<00:02, 1.96it/s]
70%|███████ | 7/10 [00:03<00:01, 1.93it/s]
80%|████████ | 8/10 [00:04<00:01, 1.95it/s]
90%|█████████ | 9/10 [00:04<00:00, 1.93it/s]
100%|██████████| 10/10 [00:05<00:00, 1.92it/s]
100%|██████████| 10/10 [00:05<00:00, 1.91it/s]
- -> create 1132 synthetic samples
- -> test with 'LR'
- LR tn, fp: 281, 8
- LR fn, tp: 3, 4
- LR f1 score: 0.421
- LR cohens kappa score: 0.403
- LR average precision score: 0.316
- -> test with 'RF'
- RF tn, fp: 288, 1
- RF fn, tp: 5, 2
- RF f1 score: 0.400
- RF cohens kappa score: 0.391
- -> test with 'GB'
- GB tn, fp: 288, 1
- GB fn, tp: 5, 2
- GB f1 score: 0.400
- GB cohens kappa score: 0.391
- -> test with 'KNN'
- KNN tn, fp: 285, 4
- KNN fn, tp: 4, 3
- KNN f1 score: 0.429
- KNN cohens kappa score: 0.415
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 289, 41
- LR fn, tp: 6, 7
- LR f1 score: 0.625
- LR cohens kappa score: 0.615
- LR average precision score: 0.692
- average:
- LR tn, fp: 272.68, 17.12
- LR fn, tp: 2.12, 4.88
- LR f1 score: 0.375
- LR cohens kappa score: 0.353
- LR average precision score: 0.428
- minimum:
- LR tn, fp: 249, 1
- LR fn, tp: 0, 1
- LR f1 score: 0.200
- LR cohens kappa score: 0.175
- LR average precision score: 0.162
- -----[ RF ]-----
- maximum:
- RF tn, fp: 290, 3
- RF fn, tp: 7, 5
- RF f1 score: 0.769
- RF cohens kappa score: 0.764
- average:
- RF tn, fp: 288.96, 0.84
- RF fn, tp: 4.56, 2.44
- RF f1 score: 0.459
- RF cohens kappa score: 0.452
- minimum:
- RF tn, fp: 287, 0
- RF fn, tp: 2, 0
- RF f1 score: 0.000
- RF cohens kappa score: 0.000
- -----[ GB ]-----
- maximum:
- GB tn, fp: 290, 5
- GB fn, tp: 7, 5
- GB f1 score: 0.769
- GB cohens kappa score: 0.764
- average:
- GB tn, fp: 287.76, 2.04
- GB fn, tp: 4.16, 2.84
- GB f1 score: 0.463
- GB cohens kappa score: 0.453
- minimum:
- GB tn, fp: 285, 0
- GB fn, tp: 2, 0
- GB f1 score: 0.000
- GB cohens kappa score: -0.006
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 285, 19
- KNN fn, tp: 4, 7
- KNN f1 score: 0.625
- KNN cohens kappa score: 0.615
- average:
- KNN tn, fp: 279.36, 10.44
- KNN fn, tp: 2.44, 4.56
- KNN f1 score: 0.424
- KNN cohens kappa score: 0.405
- minimum:
- KNN tn, fp: 271, 4
- KNN fn, tp: 0, 3
- KNN f1 score: 0.214
- KNN cohens kappa score: 0.185
|