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- ///////////////////////////////////////////
- // Running ctGAN on folding_kr-vs-k-three_vs_eleven
- ///////////////////////////////////////////
- Load 'data_input/folding_kr-vs-k-three_vs_eleven'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 547, 24
- LR fn, tp: 0, 17
- LR f1 score: 0.586
- LR cohens kappa score: 0.569
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 558, 13
- GB fn, tp: 0, 17
- GB f1 score: 0.723
- GB cohens kappa score: 0.713
- -> test with 'KNN'
- KNN tn, fp: 551, 20
- KNN fn, tp: 0, 17
- KNN f1 score: 0.630
- KNN cohens kappa score: 0.614
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 17
- LR fn, tp: 0, 17
- LR f1 score: 0.667
- LR cohens kappa score: 0.653
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 564, 7
- GB fn, tp: 0, 17
- GB f1 score: 0.829
- GB cohens kappa score: 0.823
- -> test with 'KNN'
- KNN tn, fp: 557, 14
- KNN fn, tp: 0, 17
- KNN f1 score: 0.708
- KNN cohens kappa score: 0.697
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 545, 26
- LR fn, tp: 0, 17
- LR f1 score: 0.567
- LR cohens kappa score: 0.548
- LR average precision score: 0.997
- -> test with 'GB'
- GB tn, fp: 561, 10
- GB fn, tp: 0, 17
- GB f1 score: 0.773
- GB cohens kappa score: 0.764
- -> test with 'KNN'
- KNN tn, fp: 556, 15
- KNN fn, tp: 0, 17
- KNN f1 score: 0.694
- KNN cohens kappa score: 0.682
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 532, 39
- LR fn, tp: 0, 17
- LR f1 score: 0.466
- LR cohens kappa score: 0.441
- LR average precision score: 0.987
- -> test with 'GB'
- GB tn, fp: 557, 14
- GB fn, tp: 0, 17
- GB f1 score: 0.708
- GB cohens kappa score: 0.697
- -> test with 'KNN'
- KNN tn, fp: 546, 25
- KNN fn, tp: 0, 17
- KNN f1 score: 0.576
- KNN cohens kappa score: 0.558
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 552, 18
- LR fn, tp: 0, 13
- LR f1 score: 0.591
- LR cohens kappa score: 0.578
- LR average precision score: 0.982
- -> test with 'GB'
- GB tn, fp: 558, 12
- GB fn, tp: 0, 13
- GB f1 score: 0.684
- GB cohens kappa score: 0.675
- -> test with 'KNN'
- KNN tn, fp: 554, 16
- KNN fn, tp: 0, 13
- KNN f1 score: 0.619
- KNN cohens kappa score: 0.607
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 540, 31
- LR fn, tp: 0, 17
- LR f1 score: 0.523
- LR cohens kappa score: 0.502
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 561, 10
- GB fn, tp: 0, 17
- GB f1 score: 0.773
- GB cohens kappa score: 0.764
- -> test with 'KNN'
- KNN tn, fp: 556, 15
- KNN fn, tp: 0, 17
- KNN f1 score: 0.694
- KNN cohens kappa score: 0.682
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 548, 23
- LR fn, tp: 0, 17
- LR f1 score: 0.596
- LR cohens kappa score: 0.579
- LR average precision score: 0.991
- -> test with 'GB'
- GB tn, fp: 560, 11
- GB fn, tp: 0, 17
- GB f1 score: 0.756
- GB cohens kappa score: 0.746
- -> test with 'KNN'
- KNN tn, fp: 550, 21
- KNN fn, tp: 0, 17
- KNN f1 score: 0.618
- KNN cohens kappa score: 0.602
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 552, 19
- LR fn, tp: 0, 17
- LR f1 score: 0.642
- LR cohens kappa score: 0.627
- LR average precision score: 0.977
- -> test with 'GB'
- GB tn, fp: 557, 14
- GB fn, tp: 0, 17
- GB f1 score: 0.708
- GB cohens kappa score: 0.697
- -> test with 'KNN'
- KNN tn, fp: 550, 21
- KNN fn, tp: 0, 17
- KNN f1 score: 0.618
- KNN cohens kappa score: 0.602
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 552, 19
- LR fn, tp: 0, 17
- LR f1 score: 0.642
- LR cohens kappa score: 0.627
- LR average precision score: 0.989
- -> test with 'GB'
- GB tn, fp: 561, 10
- GB fn, tp: 0, 17
- GB f1 score: 0.773
- GB cohens kappa score: 0.764
- -> test with 'KNN'
- KNN tn, fp: 558, 13
- KNN fn, tp: 0, 17
- KNN f1 score: 0.723
- KNN cohens kappa score: 0.713
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 547, 23
- LR fn, tp: 0, 13
- LR f1 score: 0.531
- LR cohens kappa score: 0.515
- LR average precision score: 0.990
- -> test with 'GB'
- GB tn, fp: 559, 11
- GB fn, tp: 0, 13
- GB f1 score: 0.703
- GB cohens kappa score: 0.694
- -> test with 'KNN'
- KNN tn, fp: 548, 22
- KNN fn, tp: 0, 13
- KNN f1 score: 0.542
- KNN cohens kappa score: 0.526
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 551, 20
- LR fn, tp: 0, 17
- LR f1 score: 0.630
- LR cohens kappa score: 0.614
- LR average precision score: 0.994
- -> test with 'GB'
- GB tn, fp: 561, 10
- GB fn, tp: 0, 17
- GB f1 score: 0.773
- GB cohens kappa score: 0.764
- -> test with 'KNN'
- KNN tn, fp: 553, 18
- KNN fn, tp: 0, 17
- KNN f1 score: 0.654
- KNN cohens kappa score: 0.640
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 548, 23
- LR fn, tp: 0, 17
- LR f1 score: 0.596
- LR cohens kappa score: 0.579
- LR average precision score: 0.994
- -> test with 'GB'
- GB tn, fp: 562, 9
- GB fn, tp: 0, 17
- GB f1 score: 0.791
- GB cohens kappa score: 0.783
- -> test with 'KNN'
- KNN tn, fp: 552, 19
- KNN fn, tp: 0, 17
- KNN f1 score: 0.642
- KNN cohens kappa score: 0.627
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 543, 28
- LR fn, tp: 0, 17
- LR f1 score: 0.548
- LR cohens kappa score: 0.529
- LR average precision score: 0.997
- -> test with 'GB'
- GB tn, fp: 559, 12
- GB fn, tp: 0, 17
- GB f1 score: 0.739
- GB cohens kappa score: 0.729
- -> test with 'KNN'
- KNN tn, fp: 554, 17
- KNN fn, tp: 0, 17
- KNN f1 score: 0.667
- KNN cohens kappa score: 0.653
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 21
- LR fn, tp: 0, 17
- LR f1 score: 0.618
- LR cohens kappa score: 0.602
- LR average precision score: 0.997
- -> test with 'GB'
- GB tn, fp: 560, 11
- GB fn, tp: 0, 17
- GB f1 score: 0.756
- GB cohens kappa score: 0.746
- -> test with 'KNN'
- KNN tn, fp: 551, 20
- KNN fn, tp: 0, 17
- KNN f1 score: 0.630
- KNN cohens kappa score: 0.614
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 540, 30
- LR fn, tp: 0, 13
- LR f1 score: 0.464
- LR cohens kappa score: 0.445
- LR average precision score: 0.990
- -> test with 'GB'
- GB tn, fp: 558, 12
- GB fn, tp: 0, 13
- GB f1 score: 0.684
- GB cohens kappa score: 0.675
- -> test with 'KNN'
- KNN tn, fp: 547, 23
- KNN fn, tp: 0, 13
- KNN f1 score: 0.531
- KNN cohens kappa score: 0.515
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 536, 35
- LR fn, tp: 0, 17
- LR f1 score: 0.493
- LR cohens kappa score: 0.470
- LR average precision score: 0.997
- -> test with 'GB'
- GB tn, fp: 558, 13
- GB fn, tp: 0, 17
- GB f1 score: 0.723
- GB cohens kappa score: 0.713
- -> test with 'KNN'
- KNN tn, fp: 549, 22
- KNN fn, tp: 0, 17
- KNN f1 score: 0.607
- KNN cohens kappa score: 0.591
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 538, 33
- LR fn, tp: 0, 17
- LR f1 score: 0.507
- LR cohens kappa score: 0.485
- LR average precision score: 0.997
- -> test with 'GB'
- GB tn, fp: 558, 13
- GB fn, tp: 0, 17
- GB f1 score: 0.723
- GB cohens kappa score: 0.713
- -> test with 'KNN'
- KNN tn, fp: 550, 21
- KNN fn, tp: 0, 17
- KNN f1 score: 0.618
- KNN cohens kappa score: 0.602
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 547, 24
- LR fn, tp: 0, 17
- LR f1 score: 0.586
- LR cohens kappa score: 0.569
- LR average precision score: 0.989
- -> test with 'GB'
- GB tn, fp: 558, 13
- GB fn, tp: 0, 17
- GB f1 score: 0.723
- GB cohens kappa score: 0.713
- -> test with 'KNN'
- KNN tn, fp: 552, 19
- KNN fn, tp: 0, 17
- KNN f1 score: 0.642
- KNN cohens kappa score: 0.627
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 553, 18
- LR fn, tp: 0, 17
- LR f1 score: 0.654
- LR cohens kappa score: 0.640
- LR average precision score: 0.991
- -> test with 'GB'
- GB tn, fp: 562, 9
- GB fn, tp: 0, 17
- GB f1 score: 0.791
- GB cohens kappa score: 0.783
- -> test with 'KNN'
- KNN tn, fp: 555, 16
- KNN fn, tp: 0, 17
- KNN f1 score: 0.680
- KNN cohens kappa score: 0.667
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 15
- LR fn, tp: 0, 13
- LR f1 score: 0.634
- LR cohens kappa score: 0.623
- LR average precision score: 0.995
- -> test with 'GB'
- GB tn, fp: 565, 5
- GB fn, tp: 0, 13
- GB f1 score: 0.839
- GB cohens kappa score: 0.834
- -> test with 'KNN'
- KNN tn, fp: 559, 11
- KNN fn, tp: 0, 13
- KNN f1 score: 0.703
- KNN cohens kappa score: 0.694
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 544, 27
- LR fn, tp: 0, 17
- LR f1 score: 0.557
- LR cohens kappa score: 0.538
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 562, 9
- GB fn, tp: 0, 17
- GB f1 score: 0.791
- GB cohens kappa score: 0.783
- -> test with 'KNN'
- KNN tn, fp: 551, 20
- KNN fn, tp: 0, 17
- KNN f1 score: 0.630
- KNN cohens kappa score: 0.614
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 540, 31
- LR fn, tp: 0, 17
- LR f1 score: 0.523
- LR cohens kappa score: 0.502
- LR average precision score: 0.973
- -> test with 'GB'
- GB tn, fp: 557, 14
- GB fn, tp: 0, 17
- GB f1 score: 0.708
- GB cohens kappa score: 0.697
- -> test with 'KNN'
- KNN tn, fp: 545, 26
- KNN fn, tp: 0, 17
- KNN f1 score: 0.567
- KNN cohens kappa score: 0.548
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 551, 20
- LR fn, tp: 0, 17
- LR f1 score: 0.630
- LR cohens kappa score: 0.614
- LR average precision score: 0.991
- -> test with 'GB'
- GB tn, fp: 559, 12
- GB fn, tp: 0, 17
- GB f1 score: 0.739
- GB cohens kappa score: 0.729
- -> test with 'KNN'
- KNN tn, fp: 555, 16
- KNN fn, tp: 0, 17
- KNN f1 score: 0.680
- KNN cohens kappa score: 0.667
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2219 synthetic samples
- -> test with 'LR'
- LR tn, fp: 540, 31
- LR fn, tp: 0, 17
- LR f1 score: 0.523
- LR cohens kappa score: 0.502
- LR average precision score: 0.987
- -> test with 'GB'
- GB tn, fp: 559, 12
- GB fn, tp: 0, 17
- GB f1 score: 0.739
- GB cohens kappa score: 0.729
- -> test with 'KNN'
- KNN tn, fp: 548, 23
- KNN fn, tp: 0, 17
- KNN f1 score: 0.596
- KNN cohens kappa score: 0.579
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 2216 synthetic samples
- -> test with 'LR'
- LR tn, fp: 553, 17
- LR fn, tp: 0, 13
- LR f1 score: 0.605
- LR cohens kappa score: 0.592
- LR average precision score: 1.000
- -> test with 'GB'
- GB tn, fp: 561, 9
- GB fn, tp: 0, 13
- GB f1 score: 0.743
- GB cohens kappa score: 0.735
- -> test with 'KNN'
- KNN tn, fp: 558, 12
- KNN fn, tp: 0, 13
- KNN f1 score: 0.684
- KNN cohens kappa score: 0.675
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 555, 39
- LR fn, tp: 0, 17
- LR f1 score: 0.667
- LR cohens kappa score: 0.653
- LR average precision score: 1.000
- average:
- LR tn, fp: 546.32, 24.48
- LR fn, tp: 0.0, 16.2
- LR f1 score: 0.575
- LR cohens kappa score: 0.558
- LR average precision score: 0.992
- minimum:
- LR tn, fp: 532, 15
- LR fn, tp: 0, 13
- LR f1 score: 0.464
- LR cohens kappa score: 0.441
- LR average precision score: 0.973
- -----[ GB ]-----
- maximum:
- GB tn, fp: 565, 14
- GB fn, tp: 0, 17
- GB f1 score: 0.839
- GB cohens kappa score: 0.834
- average:
- GB tn, fp: 559.8, 11.0
- GB fn, tp: 0.0, 16.2
- GB f1 score: 0.748
- GB cohens kappa score: 0.739
- minimum:
- GB tn, fp: 557, 5
- GB fn, tp: 0, 13
- GB f1 score: 0.684
- GB cohens kappa score: 0.675
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 559, 26
- KNN fn, tp: 0, 17
- KNN f1 score: 0.723
- KNN cohens kappa score: 0.713
- average:
- KNN tn, fp: 552.2, 18.6
- KNN fn, tp: 0.0, 16.2
- KNN f1 score: 0.638
- KNN cohens kappa score: 0.624
- minimum:
- KNN tn, fp: 545, 11
- KNN fn, tp: 0, 13
- KNN f1 score: 0.531
- KNN cohens kappa score: 0.515
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