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- ///////////////////////////////////////////
- // Running ProWRAS on folding_abalone9-18
- ///////////////////////////////////////////
- Load 'data_input/folding_abalone9-18'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 128, 10
- LR fn, tp: 1, 8
- LR f1 score: 0.593
- LR cohens kappa score: 0.556
- LR average precision score: 0.908
- -> test with 'GB'
- GB tn, fp: 132, 6
- GB fn, tp: 4, 5
- GB f1 score: 0.500
- GB cohens kappa score: 0.464
- -> test with 'KNN'
- KNN tn, fp: 124, 14
- KNN fn, tp: 4, 5
- KNN f1 score: 0.357
- KNN cohens kappa score: 0.299
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 4, 5
- LR f1 score: 0.500
- LR cohens kappa score: 0.464
- LR average precision score: 0.569
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 6, 3
- GB f1 score: 0.375
- GB cohens kappa score: 0.340
- -> test with 'KNN'
- KNN tn, fp: 123, 15
- KNN fn, tp: 4, 5
- KNN f1 score: 0.345
- KNN cohens kappa score: 0.284
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 1, 8
- LR f1 score: 0.696
- LR cohens kappa score: 0.671
- LR average precision score: 0.815
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 5, 4
- GB f1 score: 0.471
- GB cohens kappa score: 0.438
- -> test with 'KNN'
- KNN tn, fp: 128, 10
- KNN fn, tp: 4, 5
- KNN f1 score: 0.417
- KNN cohens kappa score: 0.368
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 4, 5
- LR f1 score: 0.500
- LR cohens kappa score: 0.464
- LR average precision score: 0.599
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 6, 3
- GB f1 score: 0.353
- GB cohens kappa score: 0.313
- -> test with 'KNN'
- KNN tn, fp: 129, 9
- KNN fn, tp: 3, 6
- KNN f1 score: 0.500
- KNN cohens kappa score: 0.459
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 128, 9
- LR fn, tp: 2, 4
- LR f1 score: 0.421
- LR cohens kappa score: 0.386
- LR average precision score: 0.442
- -> test with 'GB'
- GB tn, fp: 131, 6
- GB fn, tp: 4, 2
- GB f1 score: 0.286
- GB cohens kappa score: 0.250
- -> test with 'KNN'
- KNN tn, fp: 130, 7
- KNN fn, tp: 2, 4
- KNN f1 score: 0.471
- KNN cohens kappa score: 0.440
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 129, 9
- LR fn, tp: 1, 8
- LR f1 score: 0.615
- LR cohens kappa score: 0.582
- LR average precision score: 0.610
- -> test with 'GB'
- GB tn, fp: 131, 7
- GB fn, tp: 5, 4
- GB f1 score: 0.400
- GB cohens kappa score: 0.357
- -> test with 'KNN'
- KNN tn, fp: 129, 9
- KNN fn, tp: 5, 4
- KNN f1 score: 0.364
- KNN cohens kappa score: 0.314
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 133, 5
- LR fn, tp: 3, 6
- LR f1 score: 0.600
- LR cohens kappa score: 0.571
- LR average precision score: 0.796
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 6, 3
- GB f1 score: 0.375
- GB cohens kappa score: 0.340
- -> test with 'KNN'
- KNN tn, fp: 133, 5
- KNN fn, tp: 3, 6
- KNN f1 score: 0.600
- KNN cohens kappa score: 0.571
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 134, 4
- LR fn, tp: 2, 7
- LR f1 score: 0.700
- LR cohens kappa score: 0.678
- LR average precision score: 0.728
- -> test with 'GB'
- GB tn, fp: 130, 8
- GB fn, tp: 7, 2
- GB f1 score: 0.211
- GB cohens kappa score: 0.156
- -> test with 'KNN'
- KNN tn, fp: 129, 9
- KNN fn, tp: 1, 8
- KNN f1 score: 0.615
- KNN cohens kappa score: 0.582
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 7
- LR fn, tp: 2, 7
- LR f1 score: 0.609
- LR cohens kappa score: 0.577
- LR average precision score: 0.726
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 5, 4
- GB f1 score: 0.444
- GB cohens kappa score: 0.408
- -> test with 'KNN'
- KNN tn, fp: 124, 14
- KNN fn, tp: 5, 4
- KNN f1 score: 0.296
- KNN cohens kappa score: 0.234
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 128, 9
- LR fn, tp: 0, 6
- LR f1 score: 0.571
- LR cohens kappa score: 0.544
- LR average precision score: 0.573
- -> test with 'GB'
- GB tn, fp: 130, 7
- GB fn, tp: 3, 3
- GB f1 score: 0.375
- GB cohens kappa score: 0.340
- -> test with 'KNN'
- KNN tn, fp: 123, 14
- KNN fn, tp: 3, 3
- KNN f1 score: 0.261
- KNN cohens kappa score: 0.212
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 5, 4
- LR f1 score: 0.421
- LR cohens kappa score: 0.381
- LR average precision score: 0.515
- -> test with 'GB'
- GB tn, fp: 131, 7
- GB fn, tp: 6, 3
- GB f1 score: 0.316
- GB cohens kappa score: 0.269
- -> test with 'KNN'
- KNN tn, fp: 130, 8
- KNN fn, tp: 7, 2
- KNN f1 score: 0.211
- KNN cohens kappa score: 0.156
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 133, 5
- LR fn, tp: 0, 9
- LR f1 score: 0.783
- LR cohens kappa score: 0.765
- LR average precision score: 0.906
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 3, 6
- GB f1 score: 0.667
- GB cohens kappa score: 0.645
- -> test with 'KNN'
- KNN tn, fp: 122, 16
- KNN fn, tp: 4, 5
- KNN f1 score: 0.333
- KNN cohens kappa score: 0.271
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 134, 4
- LR fn, tp: 4, 5
- LR f1 score: 0.556
- LR cohens kappa score: 0.527
- LR average precision score: 0.649
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 6, 3
- GB f1 score: 0.375
- GB cohens kappa score: 0.340
- -> test with 'KNN'
- KNN tn, fp: 130, 8
- KNN fn, tp: 5, 4
- KNN f1 score: 0.381
- KNN cohens kappa score: 0.334
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 120, 18
- LR fn, tp: 1, 8
- LR f1 score: 0.457
- LR cohens kappa score: 0.403
- LR average precision score: 0.699
- -> test with 'GB'
- GB tn, fp: 129, 9
- GB fn, tp: 5, 4
- GB f1 score: 0.364
- GB cohens kappa score: 0.314
- -> test with 'KNN'
- KNN tn, fp: 123, 15
- KNN fn, tp: 4, 5
- KNN f1 score: 0.345
- KNN cohens kappa score: 0.284
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 129, 8
- LR fn, tp: 2, 4
- LR f1 score: 0.444
- LR cohens kappa score: 0.412
- LR average precision score: 0.532
- -> test with 'GB'
- GB tn, fp: 131, 6
- GB fn, tp: 3, 3
- GB f1 score: 0.400
- GB cohens kappa score: 0.368
- -> test with 'KNN'
- KNN tn, fp: 127, 10
- KNN fn, tp: 2, 4
- KNN f1 score: 0.400
- KNN cohens kappa score: 0.363
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 130, 8
- LR fn, tp: 5, 4
- LR f1 score: 0.381
- LR cohens kappa score: 0.334
- LR average precision score: 0.500
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 5, 4
- GB f1 score: 0.471
- GB cohens kappa score: 0.438
- -> test with 'KNN'
- KNN tn, fp: 125, 13
- KNN fn, tp: 5, 4
- KNN f1 score: 0.308
- KNN cohens kappa score: 0.247
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 129, 9
- LR fn, tp: 3, 6
- LR f1 score: 0.500
- LR cohens kappa score: 0.459
- LR average precision score: 0.668
- -> test with 'GB'
- GB tn, fp: 127, 11
- GB fn, tp: 4, 5
- GB f1 score: 0.400
- GB cohens kappa score: 0.349
- -> test with 'KNN'
- KNN tn, fp: 124, 14
- KNN fn, tp: 3, 6
- KNN f1 score: 0.414
- KNN cohens kappa score: 0.360
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 133, 5
- LR fn, tp: 2, 7
- LR f1 score: 0.667
- LR cohens kappa score: 0.642
- LR average precision score: 0.654
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 4, 5
- GB f1 score: 0.526
- GB cohens kappa score: 0.494
- -> test with 'KNN'
- KNN tn, fp: 129, 9
- KNN fn, tp: 4, 5
- KNN f1 score: 0.435
- KNN cohens kappa score: 0.389
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 7
- LR fn, tp: 0, 9
- LR f1 score: 0.720
- LR cohens kappa score: 0.696
- LR average precision score: 0.912
- -> test with 'GB'
- GB tn, fp: 129, 9
- GB fn, tp: 6, 3
- GB f1 score: 0.286
- GB cohens kappa score: 0.232
- -> test with 'KNN'
- KNN tn, fp: 128, 10
- KNN fn, tp: 2, 7
- KNN f1 score: 0.538
- KNN cohens kappa score: 0.498
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 6
- LR fn, tp: 1, 5
- LR f1 score: 0.588
- LR cohens kappa score: 0.565
- LR average precision score: 0.602
- -> test with 'GB'
- GB tn, fp: 131, 6
- GB fn, tp: 3, 3
- GB f1 score: 0.400
- GB cohens kappa score: 0.368
- -> test with 'KNN'
- KNN tn, fp: 127, 10
- KNN fn, tp: 2, 4
- KNN f1 score: 0.400
- KNN cohens kappa score: 0.363
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 129, 9
- LR fn, tp: 2, 7
- LR f1 score: 0.560
- LR cohens kappa score: 0.523
- LR average precision score: 0.676
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 7, 2
- GB f1 score: 0.250
- GB cohens kappa score: 0.208
- -> test with 'KNN'
- KNN tn, fp: 125, 13
- KNN fn, tp: 6, 3
- KNN f1 score: 0.240
- KNN cohens kappa score: 0.175
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 127, 11
- LR fn, tp: 1, 8
- LR f1 score: 0.571
- LR cohens kappa score: 0.533
- LR average precision score: 0.710
- -> test with 'GB'
- GB tn, fp: 132, 6
- GB fn, tp: 5, 4
- GB f1 score: 0.421
- GB cohens kappa score: 0.381
- -> test with 'KNN'
- KNN tn, fp: 130, 8
- KNN fn, tp: 4, 5
- KNN f1 score: 0.455
- KNN cohens kappa score: 0.412
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 4, 5
- LR f1 score: 0.500
- LR cohens kappa score: 0.464
- LR average precision score: 0.528
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 5, 4
- GB f1 score: 0.471
- GB cohens kappa score: 0.438
- -> test with 'KNN'
- KNN tn, fp: 126, 12
- KNN fn, tp: 6, 3
- KNN f1 score: 0.250
- KNN cohens kappa score: 0.188
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 135, 3
- LR fn, tp: 2, 7
- LR f1 score: 0.737
- LR cohens kappa score: 0.719
- LR average precision score: 0.925
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 5, 4
- GB f1 score: 0.471
- GB cohens kappa score: 0.438
- -> test with 'KNN'
- KNN tn, fp: 129, 9
- KNN fn, tp: 4, 5
- KNN f1 score: 0.435
- KNN cohens kappa score: 0.389
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 6
- LR fn, tp: 2, 4
- LR f1 score: 0.500
- LR cohens kappa score: 0.472
- LR average precision score: 0.802
- -> test with 'GB'
- GB tn, fp: 134, 3
- GB fn, tp: 4, 2
- GB f1 score: 0.364
- GB cohens kappa score: 0.338
- -> test with 'KNN'
- KNN tn, fp: 131, 6
- KNN fn, tp: 2, 4
- KNN f1 score: 0.500
- KNN cohens kappa score: 0.472
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 135, 18
- LR fn, tp: 5, 9
- LR f1 score: 0.783
- LR cohens kappa score: 0.765
- LR average precision score: 0.925
- average:
- LR tn, fp: 130.52, 7.28
- LR fn, tp: 2.16, 6.24
- LR f1 score: 0.568
- LR cohens kappa score: 0.535
- LR average precision score: 0.682
- minimum:
- LR tn, fp: 120, 3
- LR fn, tp: 0, 4
- LR f1 score: 0.381
- LR cohens kappa score: 0.334
- LR average precision score: 0.442
- -----[ GB ]-----
- maximum:
- GB tn, fp: 135, 11
- GB fn, tp: 7, 6
- GB f1 score: 0.667
- GB cohens kappa score: 0.645
- average:
- GB tn, fp: 132.12, 5.68
- GB fn, tp: 4.88, 3.52
- GB f1 score: 0.399
- GB cohens kappa score: 0.361
- minimum:
- GB tn, fp: 127, 3
- GB fn, tp: 3, 2
- GB f1 score: 0.211
- GB cohens kappa score: 0.156
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 133, 16
- KNN fn, tp: 7, 8
- KNN f1 score: 0.615
- KNN cohens kappa score: 0.582
- average:
- KNN tn, fp: 127.12, 10.68
- KNN fn, tp: 3.76, 4.64
- KNN f1 score: 0.395
- KNN cohens kappa score: 0.347
- minimum:
- KNN tn, fp: 122, 5
- KNN fn, tp: 1, 2
- KNN f1 score: 0.211
- KNN cohens kappa score: 0.156
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