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- ///////////////////////////////////////////
- // Running CTAB-GAN on folding_kr-vs-k-zero-one_vs_draw
- ///////////////////////////////////////////
- Load 'data_input/folding_kr-vs-k-zero-one_vs_draw'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 553, 7
- LR fn, tp: 3, 18
- LR f1 score: 0.783
- LR cohens kappa score: 0.774
- LR average precision score: 0.863
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 3, 18
- GB f1 score: 0.923
- GB cohens kappa score: 0.920
- -> test with 'KNN'
- KNN tn, fp: 552, 8
- KNN fn, tp: 2, 19
- KNN f1 score: 0.792
- KNN cohens kappa score: 0.783
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 542, 18
- LR fn, tp: 2, 19
- LR f1 score: 0.655
- LR cohens kappa score: 0.639
- LR average precision score: 0.899
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 552, 8
- KNN fn, tp: 3, 18
- KNN f1 score: 0.766
- KNN cohens kappa score: 0.756
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 551, 9
- LR fn, tp: 3, 18
- LR f1 score: 0.750
- LR cohens kappa score: 0.739
- LR average precision score: 0.889
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 553, 7
- KNN fn, tp: 3, 18
- KNN f1 score: 0.783
- KNN cohens kappa score: 0.774
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 542, 18
- LR fn, tp: 2, 19
- LR f1 score: 0.655
- LR cohens kappa score: 0.639
- LR average precision score: 0.857
- -> test with 'GB'
- GB tn, fp: 555, 5
- GB fn, tp: 0, 21
- GB f1 score: 0.894
- GB cohens kappa score: 0.889
- -> test with 'KNN'
- KNN tn, fp: 546, 14
- KNN fn, tp: 2, 19
- KNN f1 score: 0.704
- KNN cohens kappa score: 0.690
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 556, 0
- LR fn, tp: 1, 20
- LR f1 score: 0.976
- LR cohens kappa score: 0.975
- LR average precision score: 0.962
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 556, 0
- KNN fn, tp: 1, 20
- KNN f1 score: 0.976
- KNN cohens kappa score: 0.975
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:22<00:00, 2.26s/it]
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 557, 3
- LR fn, tp: 2, 19
- LR f1 score: 0.884
- LR cohens kappa score: 0.879
- LR average precision score: 0.943
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 554, 6
- KNN fn, tp: 1, 20
- KNN f1 score: 0.851
- KNN cohens kappa score: 0.845
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 533, 27
- LR fn, tp: 2, 19
- LR f1 score: 0.567
- LR cohens kappa score: 0.545
- LR average precision score: 0.885
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 551, 9
- KNN fn, tp: 1, 20
- KNN f1 score: 0.800
- KNN cohens kappa score: 0.791
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 556, 4
- LR fn, tp: 3, 18
- LR f1 score: 0.837
- LR cohens kappa score: 0.831
- LR average precision score: 0.939
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 557, 3
- KNN fn, tp: 4, 17
- KNN f1 score: 0.829
- KNN cohens kappa score: 0.823
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 553, 7
- LR fn, tp: 4, 17
- LR f1 score: 0.756
- LR cohens kappa score: 0.746
- LR average precision score: 0.850
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 555, 5
- KNN fn, tp: 5, 16
- KNN f1 score: 0.762
- KNN cohens kappa score: 0.753
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 2
- LR fn, tp: 2, 19
- LR f1 score: 0.905
- LR cohens kappa score: 0.901
- LR average precision score: 0.910
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 552, 4
- KNN fn, tp: 2, 19
- KNN f1 score: 0.864
- KNN cohens kappa score: 0.858
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 534, 26
- LR fn, tp: 0, 21
- LR f1 score: 0.618
- LR cohens kappa score: 0.598
- LR average precision score: 0.927
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 548, 12
- KNN fn, tp: 1, 20
- KNN f1 score: 0.755
- KNN cohens kappa score: 0.744
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 557, 3
- LR fn, tp: 4, 17
- LR f1 score: 0.829
- LR cohens kappa score: 0.823
- LR average precision score: 0.887
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 555, 5
- KNN fn, tp: 4, 17
- KNN f1 score: 0.791
- KNN cohens kappa score: 0.783
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 5
- LR fn, tp: 4, 17
- LR f1 score: 0.791
- LR cohens kappa score: 0.783
- LR average precision score: 0.851
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 5, 16
- GB f1 score: 0.865
- GB cohens kappa score: 0.861
- -> test with 'KNN'
- KNN tn, fp: 558, 2
- KNN fn, tp: 4, 17
- KNN f1 score: 0.850
- KNN cohens kappa score: 0.845
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 525, 35
- LR fn, tp: 0, 21
- LR f1 score: 0.545
- LR cohens kappa score: 0.520
- LR average precision score: 0.906
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 547, 13
- KNN fn, tp: 0, 21
- KNN f1 score: 0.764
- KNN cohens kappa score: 0.753
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 554, 2
- LR fn, tp: 2, 19
- LR f1 score: 0.905
- LR cohens kappa score: 0.901
- LR average precision score: 0.959
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 554, 2
- KNN fn, tp: 1, 20
- KNN f1 score: 0.930
- KNN cohens kappa score: 0.928
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:08<00:00, 1.24it/s]
100%|██████████| 10/10 [00:08<00:00, 1.14it/s]
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 10
- LR fn, tp: 2, 19
- LR f1 score: 0.760
- LR cohens kappa score: 0.749
- LR average precision score: 0.910
- -> test with 'GB'
- GB tn, fp: 558, 2
- GB fn, tp: 0, 21
- GB f1 score: 0.955
- GB cohens kappa score: 0.953
- -> test with 'KNN'
- KNN tn, fp: 553, 7
- KNN fn, tp: 1, 20
- KNN f1 score: 0.833
- KNN cohens kappa score: 0.826
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:08<00:00, 1.21it/s]
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 522, 38
- LR fn, tp: 0, 21
- LR f1 score: 0.525
- LR cohens kappa score: 0.498
- LR average precision score: 0.899
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 540, 20
- KNN fn, tp: 1, 20
- KNN f1 score: 0.656
- KNN cohens kappa score: 0.639
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:10<00:00, 1.03s/it]
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 558, 2
- LR fn, tp: 7, 14
- LR f1 score: 0.757
- LR cohens kappa score: 0.749
- LR average precision score: 0.715
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 5, 16
- GB f1 score: 0.865
- GB cohens kappa score: 0.861
- -> test with 'KNN'
- KNN tn, fp: 555, 5
- KNN fn, tp: 6, 15
- KNN f1 score: 0.732
- KNN cohens kappa score: 0.722
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 541, 19
- LR fn, tp: 0, 21
- LR f1 score: 0.689
- LR cohens kappa score: 0.673
- LR average precision score: 0.953
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 550, 10
- KNN fn, tp: 1, 20
- KNN f1 score: 0.784
- KNN cohens kappa score: 0.775
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 555, 1
- LR fn, tp: 4, 17
- LR f1 score: 0.872
- LR cohens kappa score: 0.867
- LR average precision score: 0.909
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 552, 4
- KNN fn, tp: 2, 19
- KNN f1 score: 0.864
- KNN cohens kappa score: 0.858
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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60%|██████ | 6/10 [00:04<00:03, 1.28it/s]
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100%|██████████| 10/10 [00:07<00:00, 1.16it/s]
100%|██████████| 10/10 [00:07<00:00, 1.26it/s]
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 522, 38
- LR fn, tp: 0, 21
- LR f1 score: 0.525
- LR cohens kappa score: 0.498
- LR average precision score: 0.954
- -> test with 'GB'
- GB tn, fp: 559, 1
- GB fn, tp: 1, 20
- GB f1 score: 0.952
- GB cohens kappa score: 0.951
- -> test with 'KNN'
- KNN tn, fp: 541, 19
- KNN fn, tp: 1, 20
- KNN f1 score: 0.667
- KNN cohens kappa score: 0.650
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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60%|██████ | 6/10 [00:05<00:03, 1.17it/s]
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- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 540, 20
- LR fn, tp: 4, 17
- LR f1 score: 0.586
- LR cohens kappa score: 0.566
- LR average precision score: 0.836
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 4, 17
- GB f1 score: 0.895
- GB cohens kappa score: 0.891
- -> test with 'KNN'
- KNN tn, fp: 550, 10
- KNN fn, tp: 5, 16
- KNN f1 score: 0.681
- KNN cohens kappa score: 0.668
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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20%|██ | 2/10 [00:01<00:06, 1.33it/s]
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100%|██████████| 10/10 [00:07<00:00, 1.27it/s]
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 556, 4
- LR fn, tp: 4, 17
- LR f1 score: 0.810
- LR cohens kappa score: 0.802
- LR average precision score: 0.881
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 2, 19
- GB f1 score: 0.950
- GB cohens kappa score: 0.948
- -> test with 'KNN'
- KNN tn, fp: 557, 3
- KNN fn, tp: 4, 17
- KNN f1 score: 0.829
- KNN cohens kappa score: 0.823
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:07<00:00, 1.26it/s]
- -> create 2152 synthetic samples
- -> test with 'LR'
- LR tn, fp: 543, 17
- LR fn, tp: 3, 18
- LR f1 score: 0.643
- LR cohens kappa score: 0.626
- LR average precision score: 0.850
- -> test with 'GB'
- GB tn, fp: 560, 0
- GB fn, tp: 1, 20
- GB f1 score: 0.976
- GB cohens kappa score: 0.975
- -> test with 'KNN'
- KNN tn, fp: 551, 9
- KNN fn, tp: 2, 19
- KNN f1 score: 0.776
- KNN cohens kappa score: 0.766
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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20%|██ | 2/10 [00:02<00:11, 1.46s/it]
30%|███ | 3/10 [00:03<00:08, 1.18s/it]
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100%|██████████| 10/10 [00:09<00:00, 1.07it/s]
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- -> create 2156 synthetic samples
- -> test with 'LR'
- LR tn, fp: 550, 6
- LR fn, tp: 1, 20
- LR f1 score: 0.851
- LR cohens kappa score: 0.845
- LR average precision score: 0.948
- -> test with 'GB'
- GB tn, fp: 556, 0
- GB fn, tp: 0, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- -> test with 'KNN'
- KNN tn, fp: 550, 6
- KNN fn, tp: 1, 20
- KNN f1 score: 0.851
- KNN cohens kappa score: 0.845
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 558, 38
- LR fn, tp: 7, 21
- LR f1 score: 0.976
- LR cohens kappa score: 0.975
- LR average precision score: 0.962
- average:
- LR tn, fp: 546.36, 12.84
- LR fn, tp: 2.36, 18.64
- LR f1 score: 0.739
- LR cohens kappa score: 0.727
- LR average precision score: 0.895
- minimum:
- LR tn, fp: 522, 0
- LR fn, tp: 0, 14
- LR f1 score: 0.525
- LR cohens kappa score: 0.498
- LR average precision score: 0.715
- -----[ GB ]-----
- maximum:
- GB tn, fp: 560, 5
- GB fn, tp: 5, 21
- GB f1 score: 1.000
- GB cohens kappa score: 1.000
- average:
- GB tn, fp: 558.72, 0.48
- GB fn, tp: 1.56, 19.44
- GB f1 score: 0.949
- GB cohens kappa score: 0.948
- minimum:
- GB tn, fp: 555, 0
- GB fn, tp: 0, 16
- GB f1 score: 0.865
- GB cohens kappa score: 0.861
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 558, 20
- KNN fn, tp: 6, 21
- KNN f1 score: 0.976
- KNN cohens kappa score: 0.975
- average:
- KNN tn, fp: 551.56, 7.64
- KNN fn, tp: 2.32, 18.68
- KNN f1 score: 0.795
- KNN cohens kappa score: 0.787
- minimum:
- KNN tn, fp: 540, 0
- KNN fn, tp: 0, 15
- KNN f1 score: 0.656
- KNN cohens kappa score: 0.639
|