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- ///////////////////////////////////////////
- // Running CTAB-GAN on folding_abalone9-18
- ///////////////////////////////////////////
- Load 'data_input/folding_abalone9-18'
- from pickle file
- Data loaded.
- -> Shuffling data
- ### Start exercise for synthetic point generator
- ====== Step 1/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 1/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 124, 14
- LR fn, tp: 2, 7
- LR f1 score: 0.467
- LR cohens kappa score: 0.417
- LR average precision score: 0.695
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 4, 5
- GB f1 score: 0.526
- GB cohens kappa score: 0.494
- -> test with 'KNN'
- KNN tn, fp: 136, 2
- KNN fn, tp: 8, 1
- KNN f1 score: 0.167
- KNN cohens kappa score: 0.140
- ------ Step 1/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 4, 5
- LR f1 score: 0.500
- LR cohens kappa score: 0.464
- LR average precision score: 0.521
- -> test with 'GB'
- GB tn, fp: 137, 1
- GB fn, tp: 7, 2
- GB f1 score: 0.333
- GB cohens kappa score: 0.312
- -> test with 'KNN'
- KNN tn, fp: 136, 2
- KNN fn, tp: 8, 1
- KNN f1 score: 0.167
- KNN cohens kappa score: 0.140
- ------ Step 1/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 127, 11
- LR fn, tp: 2, 7
- LR f1 score: 0.519
- LR cohens kappa score: 0.476
- LR average precision score: 0.704
- -> test with 'GB'
- GB tn, fp: 137, 1
- GB fn, tp: 6, 3
- GB f1 score: 0.462
- GB cohens kappa score: 0.440
- -> test with 'KNN'
- KNN tn, fp: 136, 2
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: -0.023
- ------ Step 1/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 134, 4
- LR fn, tp: 3, 6
- LR f1 score: 0.632
- LR cohens kappa score: 0.606
- LR average precision score: 0.653
- -> test with 'GB'
- GB tn, fp: 137, 1
- GB fn, tp: 6, 3
- GB f1 score: 0.462
- GB cohens kappa score: 0.440
- -> test with 'KNN'
- KNN tn, fp: 136, 2
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: -0.023
- ------ Step 1/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 121, 16
- LR fn, tp: 2, 4
- LR f1 score: 0.308
- LR cohens kappa score: 0.260
- LR average precision score: 0.514
- -> test with 'GB'
- GB tn, fp: 133, 4
- GB fn, tp: 5, 1
- GB f1 score: 0.182
- GB cohens kappa score: 0.149
- -> test with 'KNN'
- KNN tn, fp: 137, 0
- KNN fn, tp: 6, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ====== Step 2/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 2/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 133, 5
- LR fn, tp: 2, 7
- LR f1 score: 0.667
- LR cohens kappa score: 0.642
- LR average precision score: 0.760
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 8, 1
- GB f1 score: 0.143
- GB cohens kappa score: 0.104
- -> test with 'KNN'
- KNN tn, fp: 137, 1
- KNN fn, tp: 8, 1
- KNN f1 score: 0.182
- KNN cohens kappa score: 0.163
- ------ Step 2/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 130, 8
- LR fn, tp: 3, 6
- LR f1 score: 0.522
- LR cohens kappa score: 0.483
- LR average precision score: 0.630
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 6, 3
- GB f1 score: 0.353
- GB cohens kappa score: 0.313
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 7, 2
- KNN f1 score: 0.364
- KNN cohens kappa score: 0.349
- ------ Step 2/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 122, 16
- LR fn, tp: 3, 6
- LR f1 score: 0.387
- LR cohens kappa score: 0.329
- LR average precision score: 0.522
- -> test with 'GB'
- GB tn, fp: 130, 8
- GB fn, tp: 7, 2
- GB f1 score: 0.211
- GB cohens kappa score: 0.156
- -> test with 'KNN'
- KNN tn, fp: 133, 5
- KNN fn, tp: 7, 2
- KNN f1 score: 0.250
- KNN cohens kappa score: 0.208
- ------ Step 2/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 118, 20
- LR fn, tp: 1, 8
- LR f1 score: 0.432
- LR cohens kappa score: 0.374
- LR average precision score: 0.730
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 5, 4
- GB f1 score: 0.471
- GB cohens kappa score: 0.438
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 2/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 128, 9
- LR fn, tp: 2, 4
- LR f1 score: 0.421
- LR cohens kappa score: 0.386
- LR average precision score: 0.717
- -> test with 'GB'
- GB tn, fp: 135, 2
- GB fn, tp: 3, 3
- GB f1 score: 0.545
- GB cohens kappa score: 0.527
- -> test with 'KNN'
- KNN tn, fp: 137, 0
- KNN fn, tp: 6, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ====== Step 3/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 3/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 129, 9
- LR fn, tp: 4, 5
- LR f1 score: 0.435
- LR cohens kappa score: 0.389
- LR average precision score: 0.492
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 8, 1
- GB f1 score: 0.143
- GB cohens kappa score: 0.104
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 3/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 119, 19
- LR fn, tp: 1, 8
- LR f1 score: 0.444
- LR cohens kappa score: 0.388
- LR average precision score: 0.734
- -> test with 'GB'
- GB tn, fp: 137, 1
- GB fn, tp: 8, 1
- GB f1 score: 0.182
- GB cohens kappa score: 0.163
- -> test with 'KNN'
- KNN tn, fp: 136, 2
- KNN fn, tp: 6, 3
- KNN f1 score: 0.429
- KNN cohens kappa score: 0.402
- ------ Step 3/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 4, 5
- LR f1 score: 0.500
- LR cohens kappa score: 0.464
- LR average precision score: 0.619
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 7, 2
- GB f1 score: 0.267
- GB cohens kappa score: 0.229
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 7, 2
- KNN f1 score: 0.364
- KNN cohens kappa score: 0.349
- ------ Step 3/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 123, 15
- LR fn, tp: 2, 7
- LR f1 score: 0.452
- LR cohens kappa score: 0.399
- LR average precision score: 0.696
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 5, 4
- GB f1 score: 0.500
- GB cohens kappa score: 0.472
- -> test with 'KNN'
- KNN tn, fp: 135, 3
- KNN fn, tp: 8, 1
- KNN f1 score: 0.154
- KNN cohens kappa score: 0.121
- ------ Step 3/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:08<00:00, 1.10it/s]
100%|██████████| 10/10 [00:08<00:00, 1.15it/s]
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 119, 18
- LR fn, tp: 1, 5
- LR f1 score: 0.345
- LR cohens kappa score: 0.298
- LR average precision score: 0.730
- -> test with 'GB'
- GB tn, fp: 133, 4
- GB fn, tp: 3, 3
- GB f1 score: 0.462
- GB cohens kappa score: 0.436
- -> test with 'KNN'
- KNN tn, fp: 136, 1
- KNN fn, tp: 6, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: -0.012
- ====== Step 4/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 4/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:08<00:00, 1.27it/s]
100%|██████████| 10/10 [00:08<00:00, 1.20it/s]
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 125, 13
- LR fn, tp: 3, 6
- LR f1 score: 0.429
- LR cohens kappa score: 0.377
- LR average precision score: 0.617
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 6, 3
- GB f1 score: 0.400
- GB cohens kappa score: 0.369
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 4/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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100%|██████████| 10/10 [00:09<00:00, 1.11it/s]
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 114, 24
- LR fn, tp: 3, 6
- LR f1 score: 0.308
- LR cohens kappa score: 0.236
- LR average precision score: 0.647
- -> test with 'GB'
- GB tn, fp: 132, 6
- GB fn, tp: 4, 5
- GB f1 score: 0.500
- GB cohens kappa score: 0.464
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 4/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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40%|████ | 4/10 [00:03<00:04, 1.28it/s]
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60%|██████ | 6/10 [00:04<00:03, 1.29it/s]
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80%|████████ | 8/10 [00:06<00:01, 1.24it/s]
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100%|██████████| 10/10 [00:07<00:00, 1.27it/s]
100%|██████████| 10/10 [00:07<00:00, 1.28it/s]
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 133, 5
- LR fn, tp: 3, 6
- LR f1 score: 0.600
- LR cohens kappa score: 0.571
- LR average precision score: 0.741
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 6, 3
- GB f1 score: 0.353
- GB cohens kappa score: 0.313
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 4/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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60%|██████ | 6/10 [00:04<00:03, 1.31it/s]
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100%|██████████| 10/10 [00:07<00:00, 1.24it/s]
100%|██████████| 10/10 [00:07<00:00, 1.27it/s]
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 129, 9
- LR fn, tp: 3, 6
- LR f1 score: 0.500
- LR cohens kappa score: 0.459
- LR average precision score: 0.620
- -> test with 'GB'
- GB tn, fp: 133, 5
- GB fn, tp: 6, 3
- GB f1 score: 0.353
- GB cohens kappa score: 0.313
- -> test with 'KNN'
- KNN tn, fp: 136, 2
- KNN fn, tp: 8, 1
- KNN f1 score: 0.167
- KNN cohens kappa score: 0.140
- ------ Step 4/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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20%|██ | 2/10 [00:01<00:05, 1.40it/s]
30%|███ | 3/10 [00:02<00:04, 1.41it/s]
40%|████ | 4/10 [00:02<00:04, 1.39it/s]
50%|█████ | 5/10 [00:03<00:03, 1.42it/s]
60%|██████ | 6/10 [00:04<00:03, 1.33it/s]
70%|███████ | 7/10 [00:05<00:02, 1.39it/s]
80%|████████ | 8/10 [00:05<00:01, 1.34it/s]
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100%|██████████| 10/10 [00:07<00:00, 1.41it/s]
100%|██████████| 10/10 [00:07<00:00, 1.39it/s]
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 131, 6
- LR fn, tp: 1, 5
- LR f1 score: 0.588
- LR cohens kappa score: 0.565
- LR average precision score: 0.595
- -> test with 'GB'
- GB tn, fp: 134, 3
- GB fn, tp: 5, 1
- GB f1 score: 0.200
- GB cohens kappa score: 0.172
- -> test with 'KNN'
- KNN tn, fp: 137, 0
- KNN fn, tp: 5, 1
- KNN f1 score: 0.286
- KNN cohens kappa score: 0.277
- ====== Step 5/5 =======
- -> Shuffling data
- -> Spliting data to slices
- ------ Step 5/5: Slice 1/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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40%|████ | 4/10 [00:03<00:05, 1.12it/s]
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60%|██████ | 6/10 [00:05<00:03, 1.16it/s]
70%|███████ | 7/10 [00:06<00:02, 1.14it/s]
80%|████████ | 8/10 [00:06<00:01, 1.14it/s]
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100%|██████████| 10/10 [00:08<00:00, 1.18it/s]
100%|██████████| 10/10 [00:08<00:00, 1.16it/s]
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 114, 24
- LR fn, tp: 2, 7
- LR f1 score: 0.350
- LR cohens kappa score: 0.282
- LR average precision score: 0.516
- -> test with 'GB'
- GB tn, fp: 132, 6
- GB fn, tp: 7, 2
- GB f1 score: 0.235
- GB cohens kappa score: 0.189
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 8, 1
- KNN f1 score: 0.200
- KNN cohens kappa score: 0.190
- ------ Step 5/5: Slice 2/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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40%|████ | 4/10 [00:03<00:05, 1.09it/s]
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60%|██████ | 6/10 [00:05<00:03, 1.07it/s]
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80%|████████ | 8/10 [00:07<00:01, 1.06it/s]
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- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 127, 11
- LR fn, tp: 2, 7
- LR f1 score: 0.519
- LR cohens kappa score: 0.476
- LR average precision score: 0.727
- -> test with 'GB'
- GB tn, fp: 134, 4
- GB fn, tp: 6, 3
- GB f1 score: 0.375
- GB cohens kappa score: 0.340
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 9, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ------ Step 5/5: Slice 3/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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60%|██████ | 6/10 [00:05<00:03, 1.20it/s]
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100%|██████████| 10/10 [00:08<00:00, 1.14it/s]
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 132, 6
- LR fn, tp: 5, 4
- LR f1 score: 0.421
- LR cohens kappa score: 0.381
- LR average precision score: 0.557
- -> test with 'GB'
- GB tn, fp: 136, 2
- GB fn, tp: 6, 3
- GB f1 score: 0.429
- GB cohens kappa score: 0.402
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 8, 1
- KNN f1 score: 0.200
- KNN cohens kappa score: 0.190
- ------ Step 5/5: Slice 4/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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20%|██ | 2/10 [00:01<00:06, 1.26it/s]
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50%|█████ | 5/10 [00:03<00:03, 1.30it/s]
60%|██████ | 6/10 [00:04<00:03, 1.31it/s]
70%|███████ | 7/10 [00:05<00:02, 1.36it/s]
80%|████████ | 8/10 [00:06<00:01, 1.42it/s]
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100%|██████████| 10/10 [00:07<00:00, 1.41it/s]
100%|██████████| 10/10 [00:07<00:00, 1.34it/s]
- -> create 518 synthetic samples
- -> test with 'LR'
- LR tn, fp: 129, 9
- LR fn, tp: 2, 7
- LR f1 score: 0.560
- LR cohens kappa score: 0.523
- LR average precision score: 0.750
- -> test with 'GB'
- GB tn, fp: 135, 3
- GB fn, tp: 4, 5
- GB f1 score: 0.588
- GB cohens kappa score: 0.563
- -> test with 'KNN'
- KNN tn, fp: 138, 0
- KNN fn, tp: 7, 2
- KNN f1 score: 0.364
- KNN cohens kappa score: 0.349
- ------ Step 5/5: Slice 5/5 -------
- -> Reset the GAN
- -> Train generator for synthetic samples
-
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20%|██ | 2/10 [00:01<00:07, 1.11it/s]
30%|███ | 3/10 [00:02<00:06, 1.15it/s]
40%|████ | 4/10 [00:03<00:05, 1.14it/s]
50%|█████ | 5/10 [00:04<00:04, 1.14it/s]
60%|██████ | 6/10 [00:05<00:03, 1.22it/s]
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80%|████████ | 8/10 [00:06<00:01, 1.29it/s]
90%|█████████ | 9/10 [00:07<00:00, 1.28it/s]
100%|██████████| 10/10 [00:08<00:00, 1.29it/s]
100%|██████████| 10/10 [00:08<00:00, 1.22it/s]
- -> create 516 synthetic samples
- -> test with 'LR'
- LR tn, fp: 130, 7
- LR fn, tp: 2, 4
- LR f1 score: 0.471
- LR cohens kappa score: 0.440
- LR average precision score: 0.722
- -> test with 'GB'
- GB tn, fp: 136, 1
- GB fn, tp: 3, 3
- GB f1 score: 0.600
- GB cohens kappa score: 0.586
- -> test with 'KNN'
- KNN tn, fp: 137, 0
- KNN fn, tp: 6, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: 0.000
- ### Exercise is done.
- -----[ LR ]-----
- maximum:
- LR tn, fp: 134, 24
- LR fn, tp: 5, 8
- LR f1 score: 0.667
- LR cohens kappa score: 0.642
- LR average precision score: 0.760
- average:
- LR tn, fp: 126.2, 11.6
- LR fn, tp: 2.48, 5.92
- LR f1 score: 0.471
- LR cohens kappa score: 0.427
- LR average precision score: 0.648
- minimum:
- LR tn, fp: 114, 4
- LR fn, tp: 1, 4
- LR f1 score: 0.308
- LR cohens kappa score: 0.236
- LR average precision score: 0.492
- -----[ GB ]-----
- maximum:
- GB tn, fp: 137, 8
- GB fn, tp: 8, 5
- GB f1 score: 0.600
- GB cohens kappa score: 0.586
- average:
- GB tn, fp: 134.24, 3.56
- GB fn, tp: 5.64, 2.76
- GB f1 score: 0.371
- GB cohens kappa score: 0.340
- minimum:
- GB tn, fp: 130, 1
- GB fn, tp: 3, 1
- GB f1 score: 0.143
- GB cohens kappa score: 0.104
- -----[ KNN ]-----
- maximum:
- KNN tn, fp: 138, 5
- KNN fn, tp: 9, 3
- KNN f1 score: 0.429
- KNN cohens kappa score: 0.402
- average:
- KNN tn, fp: 136.92, 0.88
- KNN fn, tp: 7.64, 0.76
- KNN f1 score: 0.132
- KNN cohens kappa score: 0.118
- minimum:
- KNN tn, fp: 133, 0
- KNN fn, tp: 5, 0
- KNN f1 score: 0.000
- KNN cohens kappa score: -0.023
|