/////////////////////////////////////////// // Running CTAB-GAN on folding_yeast5 /////////////////////////////////////////// Load 'data_input/folding_yeast5' from pickle file Data loaded. -> Shuffling data ### Start exercise for synthetic point generator ====== Step 1/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 1/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 283, 5 LR fn, tp: 2, 7 LR f1 score: 0.667 LR cohens kappa score: 0.655 LR average precision score: 0.872 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 5, 4 RF f1 score: 0.615 RF cohens kappa score: 0.608 -> test with 'GB' GB tn, fp: 287, 1 GB fn, tp: 3, 6 GB f1 score: 0.750 GB cohens kappa score: 0.743 -> test with 'KNN' KNN tn, fp: 282, 6 KNN fn, tp: 2, 7 KNN f1 score: 0.636 KNN cohens kappa score: 0.623 ------ Step 1/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 279, 9 LR fn, tp: 1, 8 LR f1 score: 0.615 LR cohens kappa score: 0.600 LR average precision score: 0.714 -> test with 'RF' RF tn, fp: 285, 3 RF fn, tp: 3, 6 RF f1 score: 0.667 RF cohens kappa score: 0.656 -> test with 'GB' GB tn, fp: 285, 3 GB fn, tp: 1, 8 GB f1 score: 0.800 GB cohens kappa score: 0.793 -> test with 'KNN' KNN tn, fp: 283, 5 KNN fn, tp: 0, 9 KNN f1 score: 0.783 KNN cohens kappa score: 0.774 ------ Step 1/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 280, 8 LR fn, tp: 1, 8 LR f1 score: 0.640 LR cohens kappa score: 0.625 LR average precision score: 0.586 -> test with 'RF' RF tn, fp: 286, 2 RF fn, tp: 3, 6 RF f1 score: 0.706 RF cohens kappa score: 0.697 -> test with 'GB' GB tn, fp: 285, 3 GB fn, tp: 2, 7 GB f1 score: 0.737 GB cohens kappa score: 0.728 -> test with 'KNN' KNN tn, fp: 282, 6 KNN fn, tp: 2, 7 KNN f1 score: 0.636 KNN cohens kappa score: 0.623 ------ Step 1/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 284, 4 LR fn, tp: 4, 5 LR f1 score: 0.556 LR cohens kappa score: 0.542 LR average precision score: 0.720 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 6, 3 RF f1 score: 0.500 RF cohens kappa score: 0.492 -> test with 'GB' GB tn, fp: 288, 0 GB fn, tp: 5, 4 GB f1 score: 0.615 GB cohens kappa score: 0.608 -> test with 'KNN' KNN tn, fp: 287, 1 KNN fn, tp: 4, 5 KNN f1 score: 0.667 KNN cohens kappa score: 0.658 ------ Step 1/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1116 synthetic samples -> test with 'LR' LR tn, fp: 279, 9 LR fn, tp: 1, 7 LR f1 score: 0.583 LR cohens kappa score: 0.568 LR average precision score: 0.616 -> test with 'RF' RF tn, fp: 286, 2 RF fn, tp: 4, 4 RF f1 score: 0.571 RF cohens kappa score: 0.561 -> test with 'GB' GB tn, fp: 286, 2 GB fn, tp: 3, 5 GB f1 score: 0.667 GB cohens kappa score: 0.658 -> test with 'KNN' KNN tn, fp: 281, 7 KNN fn, tp: 1, 7 KNN f1 score: 0.636 KNN cohens kappa score: 0.623 ====== Step 2/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 2/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 279, 9 LR fn, tp: 1, 8 LR f1 score: 0.615 LR cohens kappa score: 0.600 LR average precision score: 0.757 -> test with 'RF' RF tn, fp: 287, 1 RF fn, tp: 1, 8 RF f1 score: 0.889 RF cohens kappa score: 0.885 -> test with 'GB' GB tn, fp: 287, 1 GB fn, tp: 2, 7 GB f1 score: 0.824 GB cohens kappa score: 0.818 -> test with 'KNN' KNN tn, fp: 283, 5 KNN fn, tp: 1, 8 KNN f1 score: 0.727 KNN cohens kappa score: 0.717 ------ Step 2/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 280, 8 LR fn, tp: 5, 4 LR f1 score: 0.381 LR cohens kappa score: 0.359 LR average precision score: 0.331 -> test with 'RF' RF tn, fp: 284, 4 RF fn, tp: 6, 3 RF f1 score: 0.375 RF cohens kappa score: 0.358 -> test with 'GB' GB tn, fp: 283, 5 GB fn, tp: 4, 5 GB f1 score: 0.526 GB cohens kappa score: 0.511 -> test with 'KNN' KNN tn, fp: 282, 6 KNN fn, tp: 6, 3 KNN f1 score: 0.333 KNN cohens kappa score: 0.312 ------ Step 2/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 286, 2 LR fn, tp: 1, 8 LR f1 score: 0.842 LR cohens kappa score: 0.837 LR average precision score: 0.930 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 2, 7 RF f1 score: 0.875 RF cohens kappa score: 0.872 -> test with 'GB' GB tn, fp: 286, 2 GB fn, tp: 2, 7 GB f1 score: 0.778 GB cohens kappa score: 0.771 -> test with 'KNN' KNN tn, fp: 287, 1 KNN fn, tp: 3, 6 KNN f1 score: 0.750 KNN cohens kappa score: 0.743 ------ Step 2/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 283, 5 LR fn, tp: 1, 8 LR f1 score: 0.727 LR cohens kappa score: 0.717 LR average precision score: 0.870 -> test with 'RF' RF tn, fp: 286, 2 RF fn, tp: 2, 7 RF f1 score: 0.778 RF cohens kappa score: 0.771 -> test with 'GB' GB tn, fp: 286, 2 GB fn, tp: 2, 7 GB f1 score: 0.778 GB cohens kappa score: 0.771 -> test with 'KNN' KNN tn, fp: 283, 5 KNN fn, tp: 0, 9 KNN f1 score: 0.783 KNN cohens kappa score: 0.774 ------ Step 2/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1116 synthetic samples -> test with 'LR' LR tn, fp: 283, 5 LR fn, tp: 3, 5 LR f1 score: 0.556 LR cohens kappa score: 0.542 LR average precision score: 0.598 -> test with 'RF' RF tn, fp: 286, 2 RF fn, tp: 6, 2 RF f1 score: 0.333 RF cohens kappa score: 0.321 -> test with 'GB' GB tn, fp: 286, 2 GB fn, tp: 6, 2 GB f1 score: 0.333 GB cohens kappa score: 0.321 -> test with 'KNN' KNN tn, fp: 284, 4 KNN fn, tp: 2, 6 KNN f1 score: 0.667 KNN cohens kappa score: 0.656 ====== Step 3/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 3/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 280, 8 LR fn, tp: 2, 7 LR f1 score: 0.583 LR cohens kappa score: 0.567 LR average precision score: 0.633 -> test with 'RF' RF tn, fp: 287, 1 RF fn, tp: 4, 5 RF f1 score: 0.667 RF cohens kappa score: 0.658 -> test with 'GB' GB tn, fp: 286, 2 GB fn, tp: 4, 5 GB f1 score: 0.625 GB cohens kappa score: 0.615 -> test with 'KNN' KNN tn, fp: 286, 2 KNN fn, tp: 2, 7 KNN f1 score: 0.778 KNN cohens kappa score: 0.771 ------ Step 3/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 281, 7 LR fn, tp: 2, 7 LR f1 score: 0.609 LR cohens kappa score: 0.594 LR average precision score: 0.708 -> test with 'RF' RF tn, fp: 286, 2 RF fn, tp: 3, 6 RF f1 score: 0.706 RF cohens kappa score: 0.697 -> test with 'GB' GB tn, fp: 285, 3 GB fn, tp: 3, 6 GB f1 score: 0.667 GB cohens kappa score: 0.656 -> test with 'KNN' KNN tn, fp: 285, 3 KNN fn, tp: 2, 7 KNN f1 score: 0.737 KNN cohens kappa score: 0.728 ------ Step 3/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 283, 5 LR fn, tp: 2, 7 LR f1 score: 0.667 LR cohens kappa score: 0.655 LR average precision score: 0.753 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 4, 5 RF f1 score: 0.714 RF cohens kappa score: 0.708 -> test with 'GB' GB tn, fp: 288, 0 GB fn, tp: 4, 5 GB f1 score: 0.714 GB cohens kappa score: 0.708 -> test with 'KNN' KNN tn, fp: 286, 2 KNN fn, tp: 2, 7 KNN f1 score: 0.778 KNN cohens kappa score: 0.771 ------ Step 3/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 283, 5 LR fn, tp: 0, 9 LR f1 score: 0.783 LR cohens kappa score: 0.774 LR average precision score: 0.733 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 4, 5 RF f1 score: 0.714 RF cohens kappa score: 0.708 -> test with 'GB' GB tn, fp: 288, 0 GB fn, tp: 4, 5 GB f1 score: 0.714 GB cohens kappa score: 0.708 -> test with 'KNN' KNN tn, fp: 285, 3 KNN fn, tp: 0, 9 KNN f1 score: 0.857 KNN cohens kappa score: 0.852 ------ Step 3/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1116 synthetic samples -> test with 'LR' LR tn, fp: 280, 8 LR fn, tp: 3, 5 LR f1 score: 0.476 LR cohens kappa score: 0.458 LR average precision score: 0.427 -> test with 'RF' RF tn, fp: 284, 4 RF fn, tp: 4, 4 RF f1 score: 0.500 RF cohens kappa score: 0.486 -> test with 'GB' GB tn, fp: 283, 5 GB fn, tp: 1, 7 GB f1 score: 0.700 GB cohens kappa score: 0.690 -> test with 'KNN' KNN tn, fp: 282, 6 KNN fn, tp: 1, 7 KNN f1 score: 0.667 KNN cohens kappa score: 0.655 ====== Step 4/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 4/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 281, 7 LR fn, tp: 2, 7 LR f1 score: 0.609 LR cohens kappa score: 0.594 LR average precision score: 0.750 -> test with 'RF' RF tn, fp: 286, 2 RF fn, tp: 3, 6 RF f1 score: 0.706 RF cohens kappa score: 0.697 -> test with 'GB' GB tn, fp: 285, 3 GB fn, tp: 2, 7 GB f1 score: 0.737 GB cohens kappa score: 0.728 -> test with 'KNN' KNN tn, fp: 281, 7 KNN fn, tp: 0, 9 KNN f1 score: 0.720 KNN cohens kappa score: 0.709 ------ Step 4/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 280, 8 LR fn, tp: 4, 5 LR f1 score: 0.455 LR cohens kappa score: 0.434 LR average precision score: 0.520 -> test with 'RF' RF tn, fp: 287, 1 RF fn, tp: 3, 6 RF f1 score: 0.750 RF cohens kappa score: 0.743 -> test with 'GB' GB tn, fp: 287, 1 GB fn, tp: 2, 7 GB f1 score: 0.824 GB cohens kappa score: 0.818 -> test with 'KNN' KNN tn, fp: 282, 6 KNN fn, tp: 3, 6 KNN f1 score: 0.571 KNN cohens kappa score: 0.556 ------ Step 4/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 281, 7 LR fn, tp: 0, 9 LR f1 score: 0.720 LR cohens kappa score: 0.709 LR average precision score: 0.768 -> test with 'RF' RF tn, fp: 283, 5 RF fn, tp: 4, 5 RF f1 score: 0.526 RF cohens kappa score: 0.511 -> test with 'GB' GB tn, fp: 283, 5 GB fn, tp: 4, 5 GB f1 score: 0.526 GB cohens kappa score: 0.511 -> test with 'KNN' KNN tn, fp: 281, 7 KNN fn, tp: 1, 8 KNN f1 score: 0.667 KNN cohens kappa score: 0.654 ------ Step 4/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 285, 3 LR fn, tp: 4, 5 LR f1 score: 0.588 LR cohens kappa score: 0.576 LR average precision score: 0.731 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 4, 5 RF f1 score: 0.714 RF cohens kappa score: 0.708 -> test with 'GB' GB tn, fp: 286, 2 GB fn, tp: 3, 6 GB f1 score: 0.706 GB cohens kappa score: 0.697 -> test with 'KNN' KNN tn, fp: 286, 2 KNN fn, tp: 2, 7 KNN f1 score: 0.778 KNN cohens kappa score: 0.771 ------ Step 4/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1116 synthetic samples -> test with 'LR' LR tn, fp: 282, 6 LR fn, tp: 1, 7 LR f1 score: 0.667 LR cohens kappa score: 0.655 LR average precision score: 0.650 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 2, 6 RF f1 score: 0.857 RF cohens kappa score: 0.854 -> test with 'GB' GB tn, fp: 286, 2 GB fn, tp: 2, 6 GB f1 score: 0.750 GB cohens kappa score: 0.743 -> test with 'KNN' KNN tn, fp: 281, 7 KNN fn, tp: 1, 7 KNN f1 score: 0.636 KNN cohens kappa score: 0.623 ====== Step 5/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 5/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 279, 9 LR fn, tp: 1, 8 LR f1 score: 0.615 LR cohens kappa score: 0.600 LR average precision score: 0.718 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 2, 7 RF f1 score: 0.875 RF cohens kappa score: 0.872 -> test with 'GB' GB tn, fp: 282, 6 GB fn, tp: 2, 7 GB f1 score: 0.636 GB cohens kappa score: 0.623 -> test with 'KNN' KNN tn, fp: 282, 6 KNN fn, tp: 0, 9 KNN f1 score: 0.750 KNN cohens kappa score: 0.740 ------ Step 5/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 285, 3 LR fn, tp: 4, 5 LR f1 score: 0.588 LR cohens kappa score: 0.576 LR average precision score: 0.748 -> test with 'RF' RF tn, fp: 288, 0 RF fn, tp: 4, 5 RF f1 score: 0.714 RF cohens kappa score: 0.708 -> test with 'GB' GB tn, fp: 288, 0 GB fn, tp: 3, 6 GB f1 score: 0.800 GB cohens kappa score: 0.795 -> test with 'KNN' KNN tn, fp: 286, 2 KNN fn, tp: 4, 5 KNN f1 score: 0.625 KNN cohens kappa score: 0.615 ------ Step 5/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 281, 7 LR fn, tp: 1, 8 LR f1 score: 0.667 LR cohens kappa score: 0.654 LR average precision score: 0.773 -> test with 'RF' RF tn, fp: 287, 1 RF fn, tp: 4, 5 RF f1 score: 0.667 RF cohens kappa score: 0.658 -> test with 'GB' GB tn, fp: 286, 2 GB fn, tp: 2, 7 GB f1 score: 0.778 GB cohens kappa score: 0.771 -> test with 'KNN' KNN tn, fp: 283, 5 KNN fn, tp: 1, 8 KNN f1 score: 0.727 KNN cohens kappa score: 0.717 ------ Step 5/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1117 synthetic samples -> test with 'LR' LR tn, fp: 283, 5 LR fn, tp: 3, 6 LR f1 score: 0.600 LR cohens kappa score: 0.586 LR average precision score: 0.594 -> test with 'RF' RF tn, fp: 287, 1 RF fn, tp: 5, 4 RF f1 score: 0.571 RF cohens kappa score: 0.562 -> test with 'GB' GB tn, fp: 287, 1 GB fn, tp: 3, 6 GB f1 score: 0.750 GB cohens kappa score: 0.743 -> test with 'KNN' KNN tn, fp: 282, 6 KNN fn, tp: 4, 5 KNN f1 score: 0.500 KNN cohens kappa score: 0.483 ------ Step 5/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1116 synthetic samples -> test with 'LR' LR tn, fp: 280, 8 LR fn, tp: 2, 6 LR f1 score: 0.545 LR cohens kappa score: 0.529 LR average precision score: 0.556 -> test with 'RF' RF tn, fp: 285, 3 RF fn, tp: 3, 5 RF f1 score: 0.625 RF cohens kappa score: 0.615 -> test with 'GB' GB tn, fp: 282, 6 GB fn, tp: 3, 5 GB f1 score: 0.526 GB cohens kappa score: 0.511 -> test with 'KNN' KNN tn, fp: 280, 8 KNN fn, tp: 2, 6 KNN f1 score: 0.545 KNN cohens kappa score: 0.529 ### Exercise is done. -----[ LR ]----- maximum: LR tn, fp: 286, 9 LR fn, tp: 5, 9 LR f1 score: 0.842 LR cohens kappa score: 0.837 LR average precision score: 0.930 average: LR tn, fp: 281.6, 6.4 LR fn, tp: 2.04, 6.76 LR f1 score: 0.614 LR cohens kappa score: 0.600 LR average precision score: 0.682 minimum: LR tn, fp: 279, 2 LR fn, tp: 0, 4 LR f1 score: 0.381 LR cohens kappa score: 0.359 LR average precision score: 0.331 -----[ RF ]----- maximum: RF tn, fp: 288, 5 RF fn, tp: 6, 8 RF f1 score: 0.889 RF cohens kappa score: 0.885 average: RF tn, fp: 286.56, 1.44 RF fn, tp: 3.64, 5.16 RF f1 score: 0.665 RF cohens kappa score: 0.656 minimum: RF tn, fp: 283, 0 RF fn, tp: 1, 2 RF f1 score: 0.333 RF cohens kappa score: 0.321 -----[ GB ]----- maximum: GB tn, fp: 288, 6 GB fn, tp: 6, 8 GB f1 score: 0.824 GB cohens kappa score: 0.818 average: GB tn, fp: 285.64, 2.36 GB fn, tp: 2.88, 5.92 GB f1 score: 0.690 GB cohens kappa score: 0.682 minimum: GB tn, fp: 282, 0 GB fn, tp: 1, 2 GB f1 score: 0.333 GB cohens kappa score: 0.321 -----[ KNN ]----- maximum: KNN tn, fp: 287, 8 KNN fn, tp: 6, 9 KNN f1 score: 0.857 KNN cohens kappa score: 0.852 average: KNN tn, fp: 283.28, 4.72 KNN fn, tp: 1.84, 6.96 KNN f1 score: 0.678 KNN cohens kappa score: 0.667 minimum: KNN tn, fp: 280, 1 KNN fn, tp: 0, 3 KNN f1 score: 0.333 KNN cohens kappa score: 0.312