/////////////////////////////////////////// // Running CTAB-GAN on folding_yeast4 /////////////////////////////////////////// Load 'data_input/folding_yeast4' from pickle file Data loaded. -> Shuffling data ### Start exercise for synthetic point generator ====== Step 1/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 1/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 269, 18 LR fn, tp: 6, 5 LR f1 score: 0.294 LR cohens kappa score: 0.257 LR average precision score: 0.214 -> test with 'GB' GB tn, fp: 285, 2 GB fn, tp: 10, 1 GB f1 score: 0.143 GB cohens kappa score: 0.129 -> test with 'KNN' KNN tn, fp: 277, 10 KNN fn, tp: 8, 3 KNN f1 score: 0.250 KNN cohens kappa score: 0.219 ------ Step 1/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 283, 4 LR fn, tp: 8, 3 LR f1 score: 0.333 LR cohens kappa score: 0.314 LR average precision score: 0.369 -> test with 'GB' GB tn, fp: 283, 4 GB fn, tp: 5, 6 GB f1 score: 0.571 GB cohens kappa score: 0.556 -> test with 'KNN' KNN tn, fp: 269, 18 KNN fn, tp: 7, 4 KNN f1 score: 0.242 KNN cohens kappa score: 0.203 ------ Step 1/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 270, 17 LR fn, tp: 7, 4 LR f1 score: 0.250 LR cohens kappa score: 0.212 LR average precision score: 0.162 -> test with 'GB' GB tn, fp: 286, 1 GB fn, tp: 11, 0 GB f1 score: 0.000 GB cohens kappa score: -0.006 -> test with 'KNN' KNN tn, fp: 267, 20 KNN fn, tp: 7, 4 KNN f1 score: 0.229 KNN cohens kappa score: 0.187 ------ Step 1/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 276, 11 LR fn, tp: 10, 1 LR f1 score: 0.087 LR cohens kappa score: 0.050 LR average precision score: 0.163 -> test with 'GB' GB tn, fp: 282, 5 GB fn, tp: 8, 3 GB f1 score: 0.316 GB cohens kappa score: 0.294 -> test with 'KNN' KNN tn, fp: 267, 20 KNN fn, tp: 7, 4 KNN f1 score: 0.229 KNN cohens kappa score: 0.187 ------ Step 1/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1104 synthetic samples -> test with 'LR' LR tn, fp: 281, 4 LR fn, tp: 6, 1 LR f1 score: 0.167 LR cohens kappa score: 0.150 LR average precision score: 0.262 -> test with 'GB' GB tn, fp: 283, 2 GB fn, tp: 6, 1 GB f1 score: 0.200 GB cohens kappa score: 0.188 -> test with 'KNN' KNN tn, fp: 275, 10 KNN fn, tp: 6, 1 KNN f1 score: 0.111 KNN cohens kappa score: 0.084 ====== Step 2/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 2/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 281, 6 LR fn, tp: 10, 1 LR f1 score: 0.111 LR cohens kappa score: 0.085 LR average precision score: 0.271 -> test with 'GB' GB tn, fp: 282, 5 GB fn, tp: 10, 1 GB f1 score: 0.118 GB cohens kappa score: 0.094 -> test with 'KNN' KNN tn, fp: 271, 16 KNN fn, tp: 7, 4 KNN f1 score: 0.258 KNN cohens kappa score: 0.221 ------ Step 2/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 270, 17 LR fn, tp: 4, 7 LR f1 score: 0.400 LR cohens kappa score: 0.368 LR average precision score: 0.395 -> test with 'GB' GB tn, fp: 286, 1 GB fn, tp: 6, 5 GB f1 score: 0.588 GB cohens kappa score: 0.577 -> test with 'KNN' KNN tn, fp: 263, 24 KNN fn, tp: 3, 8 KNN f1 score: 0.372 KNN cohens kappa score: 0.336 ------ Step 2/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 262, 25 LR fn, tp: 3, 8 LR f1 score: 0.364 LR cohens kappa score: 0.326 LR average precision score: 0.277 -> test with 'GB' GB tn, fp: 286, 1 GB fn, tp: 8, 3 GB f1 score: 0.400 GB cohens kappa score: 0.388 -> test with 'KNN' KNN tn, fp: 267, 20 KNN fn, tp: 7, 4 KNN f1 score: 0.229 KNN cohens kappa score: 0.187 ------ Step 2/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 281, 6 LR fn, tp: 8, 3 LR f1 score: 0.300 LR cohens kappa score: 0.276 LR average precision score: 0.240 -> test with 'GB' GB tn, fp: 285, 2 GB fn, tp: 8, 3 GB f1 score: 0.375 GB cohens kappa score: 0.360 -> test with 'KNN' KNN tn, fp: 269, 18 KNN fn, tp: 3, 8 KNN f1 score: 0.432 KNN cohens kappa score: 0.401 ------ Step 2/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1104 synthetic samples -> test with 'LR' LR tn, fp: 272, 13 LR fn, tp: 4, 3 LR f1 score: 0.261 LR cohens kappa score: 0.235 LR average precision score: 0.362 -> test with 'GB' GB tn, fp: 284, 1 GB fn, tp: 6, 1 GB f1 score: 0.222 GB cohens kappa score: 0.214 -> test with 'KNN' KNN tn, fp: 267, 18 KNN fn, tp: 4, 3 KNN f1 score: 0.214 KNN cohens kappa score: 0.185 ====== Step 3/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 3/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 259, 28 LR fn, tp: 5, 6 LR f1 score: 0.267 LR cohens kappa score: 0.223 LR average precision score: 0.244 -> test with 'GB' GB tn, fp: 284, 3 GB fn, tp: 9, 2 GB f1 score: 0.250 GB cohens kappa score: 0.232 -> test with 'KNN' KNN tn, fp: 267, 20 KNN fn, tp: 4, 7 KNN f1 score: 0.368 KNN cohens kappa score: 0.333 ------ Step 3/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 279, 8 LR fn, tp: 7, 4 LR f1 score: 0.348 LR cohens kappa score: 0.322 LR average precision score: 0.302 -> test with 'GB' GB tn, fp: 287, 0 GB fn, tp: 11, 0 GB f1 score: 0.000 GB cohens kappa score: 0.000 -> test with 'KNN' KNN tn, fp: 279, 8 KNN fn, tp: 10, 1 KNN f1 score: 0.100 KNN cohens kappa score: 0.069 ------ Step 3/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 280, 7 LR fn, tp: 9, 2 LR f1 score: 0.200 LR cohens kappa score: 0.173 LR average precision score: 0.272 -> test with 'GB' GB tn, fp: 284, 3 GB fn, tp: 9, 2 GB f1 score: 0.250 GB cohens kappa score: 0.232 -> test with 'KNN' KNN tn, fp: 272, 15 KNN fn, tp: 8, 3 KNN f1 score: 0.207 KNN cohens kappa score: 0.169 ------ Step 3/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 229, 58 LR fn, tp: 3, 8 LR f1 score: 0.208 LR cohens kappa score: 0.154 LR average precision score: 0.177 -> test with 'GB' GB tn, fp: 284, 3 GB fn, tp: 7, 4 GB f1 score: 0.444 GB cohens kappa score: 0.428 -> test with 'KNN' KNN tn, fp: 272, 15 KNN fn, tp: 4, 7 KNN f1 score: 0.424 KNN cohens kappa score: 0.394 ------ Step 3/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1104 synthetic samples -> test with 'LR' LR tn, fp: 277, 8 LR fn, tp: 5, 2 LR f1 score: 0.235 LR cohens kappa score: 0.213 LR average precision score: 0.226 -> test with 'GB' GB tn, fp: 284, 1 GB fn, tp: 4, 3 GB f1 score: 0.545 GB cohens kappa score: 0.537 -> test with 'KNN' KNN tn, fp: 270, 15 KNN fn, tp: 1, 6 KNN f1 score: 0.429 KNN cohens kappa score: 0.407 ====== Step 4/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 4/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 278, 9 LR fn, tp: 9, 2 LR f1 score: 0.182 LR cohens kappa score: 0.150 LR average precision score: 0.300 -> test with 'GB' GB tn, fp: 286, 1 GB fn, tp: 8, 3 GB f1 score: 0.400 GB cohens kappa score: 0.388 -> test with 'KNN' KNN tn, fp: 267, 20 KNN fn, tp: 9, 2 KNN f1 score: 0.121 KNN cohens kappa score: 0.076 ------ Step 4/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 256, 31 LR fn, tp: 2, 9 LR f1 score: 0.353 LR cohens kappa score: 0.313 LR average precision score: 0.226 -> test with 'GB' GB tn, fp: 287, 0 GB fn, tp: 8, 3 GB f1 score: 0.429 GB cohens kappa score: 0.419 -> test with 'KNN' KNN tn, fp: 267, 20 KNN fn, tp: 7, 4 KNN f1 score: 0.229 KNN cohens kappa score: 0.187 ------ Step 4/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 270, 17 LR fn, tp: 6, 5 LR f1 score: 0.303 LR cohens kappa score: 0.267 LR average precision score: 0.134 -> test with 'GB' GB tn, fp: 282, 5 GB fn, tp: 8, 3 GB f1 score: 0.316 GB cohens kappa score: 0.294 -> test with 'KNN' KNN tn, fp: 277, 10 KNN fn, tp: 7, 4 KNN f1 score: 0.320 KNN cohens kappa score: 0.291 ------ Step 4/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 244, 43 LR fn, tp: 2, 9 LR f1 score: 0.286 LR cohens kappa score: 0.239 LR average precision score: 0.226 -> test with 'GB' GB tn, fp: 284, 3 GB fn, tp: 10, 1 GB f1 score: 0.133 GB cohens kappa score: 0.116 -> test with 'KNN' KNN tn, fp: 254, 33 KNN fn, tp: 6, 5 KNN f1 score: 0.204 KNN cohens kappa score: 0.156 ------ Step 4/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1104 synthetic samples -> test with 'LR' LR tn, fp: 282, 3 LR fn, tp: 5, 2 LR f1 score: 0.333 LR cohens kappa score: 0.320 LR average precision score: 0.410 -> test with 'GB' GB tn, fp: 282, 3 GB fn, tp: 4, 3 GB f1 score: 0.462 GB cohens kappa score: 0.449 -> test with 'KNN' KNN tn, fp: 272, 13 KNN fn, tp: 4, 3 KNN f1 score: 0.261 KNN cohens kappa score: 0.235 ====== Step 5/5 ======= -> Shuffling data -> Spliting data to slices ------ Step 5/5: Slice 1/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 284, 3 LR fn, tp: 7, 4 LR f1 score: 0.444 LR cohens kappa score: 0.428 LR average precision score: 0.304 -> test with 'GB' GB tn, fp: 284, 3 GB fn, tp: 11, 0 GB f1 score: 0.000 GB cohens kappa score: -0.016 -> test with 'KNN' KNN tn, fp: 277, 10 KNN fn, tp: 6, 5 KNN f1 score: 0.385 KNN cohens kappa score: 0.357 ------ Step 5/5: Slice 2/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 269, 18 LR fn, tp: 4, 7 LR f1 score: 0.389 LR cohens kappa score: 0.356 LR average precision score: 0.227 -> test with 'GB' GB tn, fp: 285, 2 GB fn, tp: 8, 3 GB f1 score: 0.375 GB cohens kappa score: 0.360 -> test with 'KNN' KNN tn, fp: 261, 26 KNN fn, tp: 4, 7 KNN f1 score: 0.318 KNN cohens kappa score: 0.278 ------ Step 5/5: Slice 3/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 283, 4 LR fn, tp: 8, 3 LR f1 score: 0.333 LR cohens kappa score: 0.314 LR average precision score: 0.340 -> test with 'GB' GB tn, fp: 287, 0 GB fn, tp: 10, 1 GB f1 score: 0.167 GB cohens kappa score: 0.162 -> test with 'KNN' KNN tn, fp: 277, 10 KNN fn, tp: 8, 3 KNN f1 score: 0.250 KNN cohens kappa score: 0.219 ------ Step 5/5: Slice 4/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1106 synthetic samples -> test with 'LR' LR tn, fp: 274, 13 LR fn, tp: 7, 4 LR f1 score: 0.286 LR cohens kappa score: 0.252 LR average precision score: 0.461 -> test with 'GB' GB tn, fp: 282, 5 GB fn, tp: 10, 1 GB f1 score: 0.118 GB cohens kappa score: 0.094 -> test with 'KNN' KNN tn, fp: 263, 24 KNN fn, tp: 8, 3 KNN f1 score: 0.158 KNN cohens kappa score: 0.111 ------ Step 5/5: Slice 5/5 ------- -> Reset the GAN -> Train generator for synthetic samples 0%| | 0/10 [00:00 create 1104 synthetic samples -> test with 'LR' LR tn, fp: 281, 4 LR fn, tp: 5, 2 LR f1 score: 0.308 LR cohens kappa score: 0.292 LR average precision score: 0.234 -> test with 'GB' GB tn, fp: 281, 4 GB fn, tp: 5, 2 GB f1 score: 0.308 GB cohens kappa score: 0.292 -> test with 'KNN' KNN tn, fp: 271, 14 KNN fn, tp: 2, 5 KNN f1 score: 0.385 KNN cohens kappa score: 0.362 ### Exercise is done. -----[ LR ]----- maximum: LR tn, fp: 284, 58 LR fn, tp: 10, 9 LR f1 score: 0.444 LR cohens kappa score: 0.428 LR average precision score: 0.461 average: LR tn, fp: 271.6, 15.0 LR fn, tp: 6.0, 4.2 LR f1 score: 0.282 LR cohens kappa score: 0.252 LR average precision score: 0.272 minimum: LR tn, fp: 229, 3 LR fn, tp: 2, 1 LR f1 score: 0.087 LR cohens kappa score: 0.050 LR average precision score: 0.134 -----[ GB ]----- maximum: GB tn, fp: 287, 5 GB fn, tp: 11, 6 GB f1 score: 0.588 GB cohens kappa score: 0.577 average: GB tn, fp: 284.2, 2.4 GB fn, tp: 8.0, 2.2 GB f1 score: 0.285 GB cohens kappa score: 0.271 minimum: GB tn, fp: 281, 0 GB fn, tp: 4, 0 GB f1 score: 0.000 GB cohens kappa score: -0.016 -----[ KNN ]----- maximum: KNN tn, fp: 279, 33 KNN fn, tp: 10, 8 KNN f1 score: 0.432 KNN cohens kappa score: 0.407 average: KNN tn, fp: 269.52, 17.08 KNN fn, tp: 5.88, 4.32 KNN f1 score: 0.269 KNN cohens kappa score: 0.234 minimum: KNN tn, fp: 254, 8 KNN fn, tp: 1, 1 KNN f1 score: 0.100 KNN cohens kappa score: 0.069